ggKbase home page

SCN18_14_9_16_R1_B_scaffold_4920

Search features with annotation key words

Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_14_9_16_R1_B_scaffold_4920_1
SCN_Rubrivivax_15x, SCN_Rubrivivax_15x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..188
DNA (186bp) protein (62aa)
Serine/threonine protein kinase protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CT03_9RHIZ
Serine/threonine protein kinase protein {ECO:0000313|EMBL:EYR81312.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
serine/threonine protein kinase
SCN18_14_9_16_R1_B_scaffold_4920_2
Hydrogenophaga sp. PBC_SCNpilot_P_inoc_Hydrogenophaga_70_12, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(195..1154)
DNA (960bp) protein (320aa)
AraC family transcriptional regulator n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CD38_9RHIZ
AraC family transcriptional regulator {ECO:0000313|EMBL:EYR81311.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
AraC family transcriptional regulator
SCN18_14_9_16_R1_B_scaffold_4920_3
SCNpilot_BF_INOC_Mobile_elements_62_12, SCNpilot_BF_INOC_Mobile_elements_62_12, SCNpilot_BF_INOC_Mobile_elements_62_12, SCNpilot_BF_INOC_Mobile_elements_62_12, SCNpilot_BF_INOC_Mobile_elements_62_12, Plasmid-like

Not on your lists

1255..1800
DNA (546bp) protein (182aa)
Isochorismatase family protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EUN7_9RHIZ
Isochorismatase family protein {ECO:0000313|EMBL:EYR81310.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
isochorismatase hydrolase
SCN18_14_9_16_R1_B_scaffold_4920_4
SCNPILOT_CONT_1000_BF_Mesorhizobium_65_39, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1988..3139
DNA (1152bp) protein (384aa)
Ceramide glucosyltransferase UgcG {ECO:0000313|EMBL:EYR81309.1}; EC=2.4.1.80 {ECO:0000313|EMBL:EYR81309.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Ceramide glucosyltransferase UgcG n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CXD9_9RHIZ
ceramide glucosyltransferase
SCN18_14_9_16_R1_B_scaffold_4920_trna_2
unknown

Not on your lists

comp(3443..3516)
DNA (74bp)
transferRNA Arg
SCN18_14_9_16_R1_B_scaffold_4920_5
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3526..3831)
DNA (306bp) protein (102aa)
Putative NADH-ubiquinone oxidoreductase subunit n=1 Tax=Shinella zoogloeoides DD12 RepID=V5BX13_9RHIZ
ETC complex I subunit {ECO:0000313|EMBL:EYR82440.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
NADH-ubiquinone oxidoreductase subunit
SCN18_14_9_16_R1_B_scaffold_4920_trna_1
unknown

Not on your lists

comp(3965..4038)
DNA (74bp)
transferRNA Pro
SCN18_14_9_16_R1_B_scaffold_4920_6
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4133..4633)
DNA (501bp) protein (167aa)
Signal peptide protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CCG9_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR82441.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCN18_14_9_16_R1_B_scaffold_4920_7
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4633..5211)
DNA (579bp) protein (193aa)
cold-shock protein n=1 Tax=Rhizobium mongolense RepID=UPI0003B4AC4D
Cold shock protein {ECO:0000313|EMBL:EYR82442.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
cold shock protein
SCN18_14_9_16_R1_B_scaffold_4920_8
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5406..5660
DNA (255bp) protein (85aa)
Lactoylglutathione lyase {ECO:0000313|EMBL:KFC64054.1}; EC=4.4.1.5 {ECO:0000313|EMBL:KFC64054.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
Lactoylglutathione lyase n=1 Tax=Rhizobium sp. CF142 RepID=J2KTT1_9RHIZ
gloA; lactoylglutathione lyase
Displaying 10 items

View Taxonomy