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SCN18_14_9_16_R1_B_scaffold_1565

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_14_9_16_R1_B_scaffold_1565_1
unknown

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comp(3..101)
DNA (99bp) protein (33aa)

This feature has no annotations

SCN18_14_9_16_R1_B_scaffold_1565_2
Agrobacterium albertimagni_CN-SCN_Agrobacterium_19x, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(196..372)
DNA (177bp) protein (59aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ENF4_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR78847.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Alanine racemase domain protein
SCN18_14_9_16_R1_B_scaffold_1565_3
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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383..811
DNA (429bp) protein (143aa)
Putative uncharacterized protein n=1 Tax=Rhizobium etli CNPAF512 RepID=F2AB81_RHIET
Uncharacterized protein {ECO:0000313|EMBL:EGE58250.1}; TaxID=993047 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli CNPAF512.;"
SCN18_14_9_16_R1_B_scaffold_1565_4
Agrobacterium albertimagni_CN-SCN_Agrobacterium_19x, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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869..3580
DNA (2712bp) protein (904aa)
Leucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00049}; EC=6.1.1.4 {ECO:0000256|HAMAP-Rule:MF_00049};; Leucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00049}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
leuS; leucine--tRNA ligase (EC:6.1.1.4)
Leucine--tRNA ligase n=2 Tax=Rhizobium meliloti RepID=K0P347_RHIML
SCN18_14_9_16_R1_B_scaffold_1565_5
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3567..4091
DNA (525bp) protein (175aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CCZ4_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR78849.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCN18_14_9_16_R1_B_scaffold_1565_6
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4099..5133
DNA (1035bp) protein (345aa)
DNA polymerase III, delta subunit n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EUJ7_9RHIZ
DNA polymerase III, delta subunit {ECO:0000313|EMBL:EYR78850.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
holA; DNA polymerase III subunit delta
SCN18_14_9_16_R1_B_scaffold_1565_7
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5149..6039)
DNA (891bp) protein (297aa)
Chromosome-partitioning protein ParB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CXA3_9RHIZ
Chromosome-partitioning protein ParB {ECO:0000313|EMBL:EYR78851.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
chromosome-partitioning protein ParB
SCN18_14_9_16_R1_B_scaffold_1565_8
Agrobacterium albertimagni_CN-SCN_Agrobacterium_19x, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6063..6857)
DNA (795bp) protein (265aa)
Chromosome partitioning protein ParA n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LPD5_RHITR
Chromosome partitioning protein ParA {ECO:0000313|EMBL:EYR78852.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
chromosome partitioning protein ParA
SCN18_14_9_16_R1_B_scaffold_1565_9
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6870..7502)
DNA (633bp) protein (211aa)
Ribosomal RNA small subunit methyltransferase G {ECO:0000256|HAMAP-Rule:MF_00074, ECO:0000256|SAAS:SAAS00095882}; EC=2.1.1.170 {ECO:0000256|HAMAP-Rule:MF_00074};; 16S rRNA 7-methylguanosine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00074}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Ribosomal RNA small subunit methyltransferase G n=1 Tax=Agrobacterium tumefaciens 5A RepID=H0HD06_RHIRD
gidB; methyltransferase GidB
SCN18_14_9_16_R1_B_scaffold_1565_10
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7499..9388)
DNA (1890bp) protein (630aa)
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LSH0_RHITR
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG {ECO:0000256|HAMAP-Rule:MF_00129}; Glucose-inhibited division protein A {ECO:0000256|HAMAP-Rule:MF_00129}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
SCN18_14_9_16_R1_B_scaffold_1565_11
unknown

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comp(9366..9458)
DNA (93bp) protein (31aa)

This feature has no annotations

SCN18_14_9_16_R1_B_scaffold_1565_12
Agrobacterium albertimagni_CN-SCN_Agrobacterium_19x, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9455..10783)
DNA (1329bp) protein (443aa)
tRNA modification GTPase MnmE {ECO:0000256|HAMAP-Rule:MF_00379}; EC=3.6.-.- {ECO:0000256|HAMAP-Rule:MF_00379};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI000379DCB6
trmE; tRNA modification GTPase TrmE
SCN18_14_9_16_R1_B_scaffold_1565_13
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10908..12173)
DNA (1266bp) protein (422aa)
Transcription termination factor Rho {ECO:0000256|HAMAP-Rule:MF_01884}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_01884};; ATP-dependent helicase Rho {ECO:0000256|HAMAP-Rule:MF_01884}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
rho; transcription termination factor Rho (EC:3.6.3.15)
Transcription termination factor Rho n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WSB8_9BRAD
SCN18_14_9_16_R1_B_scaffold_1565_14
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12430..12852)
DNA (423bp) protein (141aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium oligotrophicum S58 RepID=M4Z071_9BRAD
conserved membrane hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAM86229.1}; TaxID=1245469 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium oligotrophicum S58.;"
SCN18_14_9_16_R1_B_scaffold_1565_15
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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13303..14142
DNA (840bp) protein (280aa)
Putative pyruvate, phosphate dikinase regulatory protein {ECO:0000255|HAMAP-Rule:MF_00921}; Short=PPDK regulatory protein {ECO:0000255|HAMAP-Rule:MF_00921};; EC=2.7.11.32 {ECO:0000255|HAMAP-Rule:MF_00921};; EC=2.7.4.27 {ECO:0000255|HAMAP-Rule:MF_00921};; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
Putative pyruvate, phosphate dikinase regulatory protein n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=PDRP_RHOPB
hypothetical protein
SCN18_14_9_16_R1_B_scaffold_1565_16
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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14139..14330
DNA (192bp) protein (64aa)
Maf-like protein RPD_0425 n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Y425_RHOPS
Maf-like protein
Maf-like protein RPD_0425 {ECO:0000255|HAMAP-Rule:MF_00528}; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
Displaying 16 items

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