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SCN18_14_9_16_R1_B_scaffold_1598

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_14_9_16_R1_B_scaffold_1598_1
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11..784)
DNA (774bp) protein (258aa)
Molybdate-binding periplasmic protein ModA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CNI6_9RHIZ
Molybdate-binding periplasmic protein ModA {ECO:0000313|EMBL:EYR82975.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
modA; ABC transporter, substrate binding protein (molybdate)
SCN18_14_9_16_R1_B_scaffold_1598_2
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(953..2689)
DNA (1737bp) protein (579aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CXK7_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR82974.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Methyl-accepting chemotaxis sensory transducer
SCN18_14_9_16_R1_B_scaffold_1598_3
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3044..3370
DNA (327bp) protein (109aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF080 RepID=J3BXP5_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR82973.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Hypothetical protein
SCN18_14_9_16_R1_B_scaffold_1598_4
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3370..3738
DNA (369bp) protein (123aa)
Response regulator n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C5G2_9RHIZ
Response regulator {ECO:0000313|EMBL:EYR82972.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Response regulator
SCN18_14_9_16_R1_B_scaffold_1598_5
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3735..5732
DNA (1998bp) protein (666aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Chemotaxis protein CheA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EN18_9RHIZ
cheA; Chemotaxis protein histidine kinase
SCN18_14_9_16_R1_B_scaffold_1598_6
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5729..6247
DNA (519bp) protein (173aa)
Chemotaxis signal transduction protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CQL7_9RHIZ
Chemotaxis signal transduction protein {ECO:0000313|EMBL:EYR82970.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
chemotaxis signal transduction CheW-like protein
SCN18_14_9_16_R1_B_scaffold_1598_7
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6265..7962
DNA (1698bp) protein (566aa)
Methyl-accepting chemotaxis citrate transducer n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CVC4_9RHIZ
Methyl-accepting chemotaxis citrate transducer {ECO:0000313|EMBL:EYR82969.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Chemoreceptor of MCP family, unusual structure. Methyl-accepting chemoreceptor
SCN18_14_9_16_R1_B_scaffold_1598_8
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7965..8459
DNA (495bp) protein (165aa)
Chemotaxis signal transduction protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CL52_9RHIZ
Chemotaxis signal transduction protein {ECO:0000313|EMBL:EYR80455.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
cheW; Chemotaxis protein CheW
SCN18_14_9_16_R1_B_scaffold_1598_9
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8470..9321
DNA (852bp) protein (284aa)
Chemotaxis protein methyltransferase {ECO:0000256|PIRNR:PIRNR000410}; EC=2.1.1.80 {ECO:0000256|PIRNR:PIRNR000410};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Chemotaxis protein methyltransferase 3 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C5G5_9RHIZ
MCP methyltransferase, CheR-type
SCN18_14_9_16_R1_B_scaffold_1598_10
SCNPILOT_EXPT_300_BF_Novosphingobium_63_58, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9321..10409
DNA (1089bp) protein (363aa)
Chemotaxis response regulator protein-glutamate methylesterase {ECO:0000256|HAMAP-Rule:MF_00099}; EC=3.1.1.61 {ECO:0000256|HAMAP-Rule:MF_00099};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Chemotaxis response regulator protein-glutamate methylesterase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EN25_9RHIZ
cheB; protein-glutamate methylesterase
SCN18_14_9_16_R1_B_scaffold_1598_11
Agrobacterium albertimagni_CN-SCN_Agrobacterium_19x, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10516..11223
DNA (708bp) protein (236aa)
Protein ParA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CQM4_9RHIZ
ATPases involved in chromosome partitioning ParA {ECO:0000313|EMBL:EYR80452.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
parF; Plasmid partition protein ParF
SCN18_14_9_16_R1_B_scaffold_1598_12
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11702..11848)
DNA (147bp) protein (49aa)
Uncharacterized protein n=2 Tax=Agrobacterium RepID=F0LE26_AGRSH
Uncharacterized protein {ECO:0000313|EMBL:EYR81614.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCN18_14_9_16_R1_B_scaffold_1598_13
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12020..13159)
DNA (1140bp) protein (380aa)
Aspartate/tyrosine/aromatic aminotransferase n=1 Tax=Rhizobium sp. AP16 RepID=J2WXH4_9RHIZ
Aspartate/tyrosine/aromatic aminotransferase {ECO:0000313|EMBL:EJK87868.1}; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
aspB1; transaminase
SCN18_14_9_16_R1_B_scaffold_1598_14
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13223..13786
DNA (564bp) protein (188aa)
Putative transcriptional regulator n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CEA2_9RHIZ
Putative transcriptional regulator {ECO:0000313|EMBL:EYR81616.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
transcriptional regulator
Displaying 14 items

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