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SCN18_14_9_16_R1_B_scaffold_1886

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_14_9_16_R1_B_scaffold_1886_1
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(235..1086)
DNA (852bp) protein (284aa)
Putative amino-acid ABC transporter periplasmic-binding protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CSG5_9RHIZ
Putative amino-acid ABC transporter periplasmic-binding protein {ECO:0000313|EMBL:EYR83090.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ehuB; Cystine-binding periplasmic protein precursor
SCN18_14_9_16_R1_B_scaffold_1886_2
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1152..1937)
DNA (786bp) protein (262aa)
putative amino acid ABC transporter ATP-binding protein (EC:3.6.3.21)
Putative amino-acid ABC transporter ATP-binding protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EPY6_9RHIZ
Putative amino-acid ABC transporter ATP-binding protein {ECO:0000313|EMBL:EYR83091.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCN18_14_9_16_R1_B_scaffold_1886_3
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2060..3445)
DNA (1386bp) protein (462aa)
Putative HTH-type transcriptional regulator n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C761_9RHIZ
Putative HTH-type transcriptional regulator {ECO:0000313|EMBL:EYR83092.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
GntR family transcriptional regulator
SCN18_14_9_16_R1_B_scaffold_1886_4
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3547..4029
DNA (483bp) protein (161aa)
Leucine-responsive regulatory protein Lrp n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CN04_9RHIZ
Leucine-responsive regulatory protein Lrp {ECO:0000313|EMBL:EYR83093.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative transcriptional regulator protein, AsnC family
SCN18_14_9_16_R1_B_scaffold_1886_5
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4147..5643
DNA (1497bp) protein (499aa)
Succinate-semialdehyde dehydrogenase GabD {ECO:0000313|EMBL:EYR83094.1}; EC=1.2.1.79 {ECO:0000313|EMBL:EYR83094.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
gabD3; Succinate-semialdehyde dehydrogenase [NADP(+)] GabD (EC:1.2.1.79)
Succinate-semialdehyde dehydrogenase GabD n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CX39_9RHIZ
SCN18_14_9_16_R1_B_scaffold_1886_6
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5678..7051
DNA (1374bp) protein (458aa)
Putative aminotransferase y4uB {ECO:0000313|EMBL:EYR83095.1}; EC=2.6.1.- {ECO:0000313|EMBL:EYR83095.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
aminotransferase y4uB (EC:2.6.1.-)
Putative aminotransferase y4uB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CSG0_9RHIZ
SCN18_14_9_16_R1_B_scaffold_1886_7
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7124..8404
DNA (1281bp) protein (427aa)
Acetylornithine deacetylase {ECO:0000313|EMBL:CDX45068.1}; EC=3.5.1.16 {ECO:0000313|EMBL:CDX45068.1};; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
argE-1; acetylornithine deacetylase 1 (EC:3.5.1.16)
hypothetical protein n=1 Tax=Aureimonas ureilytica RepID=UPI000373549F
SCN18_14_9_16_R1_B_scaffold_1886_8
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8866..9741)
DNA (876bp) protein (292aa)
hypothetical protein n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI0003681C36
HTH-type transcriptional regulator DgdR {ECO:0000313|EMBL:EYR83022.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
transcriptional regulator, LysR family
SCN18_14_9_16_R1_B_scaffold_1886_9
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9812..11047)
DNA (1236bp) protein (412aa)
Creatinase {ECO:0000313|EMBL:EYR83021.1}; EC=3.5.3.3 {ECO:0000313|EMBL:EYR83021.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
creatinase (EC:3.5.3.3)
Creatinase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CLR2_9RHIZ
SCN18_14_9_16_R1_B_scaffold_1886_trna_1
unknown

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comp(11505..11578)
DNA (74bp)
transferRNA Met
SCN18_14_9_16_R1_B_scaffold_1886_10
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11712..12143)
DNA (432bp) protein (144aa)
tRNA-specific 2-thiouridylase MnmA {ECO:0000256|HAMAP-Rule:MF_00144}; EC=2.8.1.- {ECO:0000256|HAMAP-Rule:MF_00144};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
tRNA-specific 2-thiouridylase MnmA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CT49_9RHIZ
trmU; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
Displaying 11 items

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