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SCN18_14_9_16_R1_B_scaffold_5651

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Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_14_9_16_R1_B_scaffold_5651_1
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(32..526)
DNA (495bp) protein (165aa)
Type II and III secretion system protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CDE0_9RHIZ
Type II and III secretion system protein {ECO:0000313|EMBL:EYR80338.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Flp pilus assembly protein, secretin CpaC
SCN18_14_9_16_R1_B_scaffold_5651_2
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(540..1349)
DNA (810bp) protein (270aa)
Flp pilus assembly protein CpaB n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2Q9L9_9RHIZ
Flp pilus assembly protein CpaB {ECO:0000313|EMBL:EYR80337.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
cpaB; pilus assembly protein
SCN18_14_9_16_R1_B_scaffold_5651_3
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1460..1966)
DNA (507bp) protein (169aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI000366B620
Flp pilus assembly protein, protease CpaA {ECO:0000313|EMBL:EYR80336.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
capA1; type IV prepilin peptidase CpaA
SCN18_14_9_16_R1_B_scaffold_5651_4
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2101..2313)
DNA (213bp) protein (71aa)
Flp pilus assembly protein, pilin Flp n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2012 RepID=J0C6W7_RHILT
PilA pilus assembly protein
Flp pilus assembly protein, pilin Flp {ECO:0000313|EMBL:EJC74720.1}; TaxID=754522 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2012.;"
SCN18_14_9_16_R1_B_scaffold_5651_5
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2636..3046
DNA (411bp) protein (137aa)
Pilus subunit transmembrane protein n=2 Tax=Rhizobium leguminosarum bv. trifolii RepID=B5ZXI7_RHILW
pilus formation domain-containing protein
Pilus formation domain-containing protein {ECO:0000313|EMBL:AIC25394.1}; TaxID=1432050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. IE4771.;"
SCN18_14_9_16_R1_B_scaffold_5651_6
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3209..3760
DNA (552bp) protein (184aa)
Putative pilus assembly protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CBU2_9RHIZ
Flp pilus assembly protein TadG {ECO:0000313|EMBL:EYR80333.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCN18_14_9_16_R1_B_scaffold_5651_7
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3760..4368
DNA (609bp) protein (203aa)
Pilus assembly protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CB72_9RHIZ
Pilus assembly protein {ECO:0000313|EMBL:EYR80332.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
tadE1; pilus assembly protein contains TadE domain
SCN18_14_9_16_R1_B_scaffold_5651_8
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4474..4977
DNA (504bp) protein (168aa)
Phosphopentomutase {ECO:0000256|HAMAP-Rule:MF_00740, ECO:0000256|SAAS:SAAS00010015}; EC=5.4.2.7 {ECO:0000256|HAMAP-Rule:MF_00740, ECO:0000256|SAAS:SAAS00009998};; Phosphodeoxyribomutase {ECO:0000256|HAMAP-Rule:MF_00740}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
phosphopentomutase (EC:5.4.2.7)
Phosphopentomutase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CR34_9RHIZ
Displaying 8 items

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