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SCN18_14_9_16_R1_B_scaffold_5730

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_14_9_16_R1_B_scaffold_5730_1
Agrobacterium albertimagni_CN-SCN_Agrobacterium_19x, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..1343
DNA (1341bp) protein (447aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
feuQ; Signal transduction histidine-protein kinase arlS (EC:2.7.13.3)
Sensor protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CY64_9RHIZ
SCN18_14_9_16_R1_B_scaffold_5730_2
Agrobacterium albertimagni_CN-SCN_Agrobacterium_19x, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1381..1884
DNA (504bp) protein (168aa)
Putative outer-membrane lipoprotein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EVC5_9RHIZ
Putative outer-membrane lipoprotein {ECO:0000313|EMBL:EYR81179.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
lipa1; 17 kDa surface antigen
SCN18_14_9_16_R1_B_scaffold_5730_3
Agrobacterium albertimagni_CN-SCN_Agrobacterium_19x, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1980..3119
DNA (1140bp) protein (380aa)
Cytochrome c-type biogenesis protein CycH n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CDU5_9RHIZ
Cytochrome c-type biogenesis protein CycH {ECO:0000313|EMBL:EYR81180.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
cycH; cytochrome c-type biogenesis protein CycH
SCN18_14_9_16_R1_B_scaffold_5730_4
Agrobacterium albertimagni_CN-SCN_Agrobacterium_19x, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3116..3565
DNA (450bp) protein (150aa)
Cytochrome c-type biogenesis protein CcmE n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CTS0_9RHIZ
Cytochrome c-type biogenesis protein CcmE {ECO:0000256|HAMAP-Rule:MF_01959}; Cytochrome c maturation protein E {ECO:0000256|HAMAP-Rule:MF_01959}; Heme chaperone CcmE {ECO:0000256|HAMAP-Rule:MF_01959}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
cycJ; Cytochrome c-type biogenesis protein CcmE
SCN18_14_9_16_R1_B_scaffold_5730_5
SCNPILOT_CONT_300_BF_Rhizobiales_67_6_partial, SCNPILOT_CONT_300_BF_Rhizobiales_67_6_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3562..3786
DNA (225bp) protein (75aa)
Cytochrome c-type biogenesis protein CycK n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D2S5_9RHIZ
Cytochrome c-type biogenesis protein CycK {ECO:0000313|EMBL:EYR81182.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
cycK; Cytochrome c-type biogenesis protein cycK
SCN18_14_9_16_R1_B_scaffold_5730_6
Agrobacterium albertimagni_CN-SCN_Agrobacterium_19x, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3840..5540
DNA (1701bp) protein (567aa)
Cytochrome c-type biogenesis protein CycK n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D2S5_9RHIZ
Cytochrome c-type biogenesis protein CycK {ECO:0000313|EMBL:EYR81182.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
cycK; cytochrome c-type biogenesis protein
SCN18_14_9_16_R1_B_scaffold_5730_7
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5537..5995
DNA (459bp) protein (153aa)
Cytochrome c-type biogenesis protein CcmH n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CY60_9RHIZ
Cytochrome c-type biogenesis protein CcmH {ECO:0000313|EMBL:EYR81183.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ccmH; cytochrome c-type biogenesis protein
SCN18_14_9_16_R1_B_scaffold_5730_8
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6130..7695
DNA (1566bp) protein (522aa)
Putative periplasmic serine endoprotease DegP {ECO:0000313|EMBL:EYR81184.1}; EC=3.4.21.107 {ECO:0000313|EMBL:EYR81184.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Putative periplasmic serine endoprotease DegP n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EVC0_9RHIZ
dop; serine protease
SCN18_14_9_16_R1_B_scaffold_5730_9
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7992..8666
DNA (675bp) protein (225aa)
Transcriptional regulatory protein CusR n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CDU0_9RHIZ
Transcriptional regulatory protein CusR {ECO:0000313|EMBL:EYR81185.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
cusR; transcriptional regulatory protein CusR
SCN18_14_9_16_R1_B_scaffold_5730_10
unknown

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comp(8645..8716)
DNA (72bp) protein (24aa)

This feature has no annotations

Displaying 10 items

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