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SCN18_14_9_16_R1_B_scaffold_2510

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_14_9_16_R1_B_scaffold_2510_1
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..377
DNA (375bp) protein (125aa)
DNA polymerase IV {ECO:0000256|HAMAP-Rule:MF_01113}; Short=Pol IV {ECO:0000256|HAMAP-Rule:MF_01113};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01113};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
DNA polymerase IV n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZ04_9RHIZ
dinB1; putative DNA polymerase IV 1
SCN18_14_9_16_R1_B_scaffold_2510_2
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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511..1815
DNA (1305bp) protein (435aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CBE0_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR80732.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCN18_14_9_16_R1_B_scaffold_2510_3
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1808..2458)
DNA (651bp) protein (217aa)
Transcriptional regulator n=1 Tax=Rhizobium sp. AP16 RepID=J2WCQ1_9RHIZ
TetR family transcriptional regulator {ECO:0000313|EMBL:KEA05618.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
transcriptional regulator
SCN18_14_9_16_R1_B_scaffold_2510_4
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2526..3050
DNA (525bp) protein (175aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. AP16 RepID=J2DCZ0_9RHIZ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EJK80582.1}; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
SCN18_14_9_16_R1_B_scaffold_2510_5
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3064..6558)
DNA (3495bp) protein (1165aa)
DNA-directed DNA polymerase {ECO:0000256|SAAS:SAAS00057170}; EC=2.7.7.7 {ECO:0000256|SAAS:SAAS00057170};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
DNA polymerase III subunit alpha n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D0A2_9RHIZ
dnaE2; DNA polymerase III, alpha subunit
SCN18_14_9_16_R1_B_scaffold_2510_6
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6913..7008
DNA (96bp) protein (32aa)
SCN18_14_9_16_R1_B_scaffold_2510_7
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7050..7736)
DNA (687bp) protein (229aa)
Lipoprotein-releasing system ATP-binding protein LolD {ECO:0000256|HAMAP-Rule:MF_01708}; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01708};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Lipoprotein-releasing system ATP-binding protein LolD n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CXG5_9RHIZ
ABC transporter, ATP-binding protein
SCN18_14_9_16_R1_B_scaffold_2510_8
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7748..9055)
DNA (1308bp) protein (436aa)
Lipoprotein-releasing system transmembrane protein LolC n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CNE8_9RHIZ
Lipoprotein-releasing system transmembrane protein LolC {ECO:0000313|EMBL:EYR80725.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
lolC; lipoprotein-releasing system transmembrane protein LolC
SCN18_14_9_16_R1_B_scaffold_2510_9
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9084..9773)
DNA (690bp) protein (230aa)
Proline--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01570, ECO:0000256|SAAS:SAAS00010700}; EC=6.1.1.15 {ECO:0000256|HAMAP-Rule:MF_01570, ECO:0000256|SAAS:SAAS00089874};; Prolyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01570}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
proS; prolyl-tRNA synthetase (EC:6.1.1.15)
Prolyl-tRNA synthetase protein n=2 Tax=Rhizobium/Agrobacterium group RepID=B9JD62_AGRRK
Displaying 9 items

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