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SCN18_14_9_16_R1_B_scaffold_2828

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_14_9_16_R1_B_scaffold_2828_1
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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52..192
DNA (141bp) protein (47aa)
alpha/beta hydrolase n=1 Tax=Rhizobium giardinii RepID=UPI0003780377
Putative hydrolase of the alpha/beta superfamily {ECO:0000313|EMBL:EYR79843.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCN18_14_9_16_R1_B_scaffold_2828_2
Agrobacterium albertimagni_CN-SCN_Agrobacterium_19x, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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205..729
DNA (525bp) protein (175aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CLV9_9RHIZ
Putative hydrolase of the alpha/beta superfamily {ECO:0000313|EMBL:EYR79843.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCN18_14_9_16_R1_B_scaffold_2828_3
Agrobacterium albertimagni_CN-SCN_Agrobacterium_19x, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(750..1967)
DNA (1218bp) protein (406aa)
Diguanylate cyclase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C629_9RHIZ
Diguanylate cyclase {ECO:0000313|EMBL:EYR79842.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
GGDEF domain-containing protein
SCN18_14_9_16_R1_B_scaffold_2828_4
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2058..3191)
DNA (1134bp) protein (378aa)
Anhydro-N-acetylmuramic acid kinase {ECO:0000256|HAMAP-Rule:MF_01270, ECO:0000256|SAAS:SAAS00085893}; EC=2.7.1.170 {ECO:0000256|HAMAP-Rule:MF_01270, ECO:0000256|SAAS:SAAS00085888};; AnhMurNAc kinase {ECO:0000256|HAMAP-Rule:MF_01270}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Anhydro-N-acetylmuramic acid kinase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ENN5_9RHIZ
putative molecular chaperone distantly related to HSP70-fold metalloprotease
SCN18_14_9_16_R1_B_scaffold_2828_5
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3306..4559
DNA (1254bp) protein (418aa)
Tyrosine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00105716}; EC=6.1.1.1 {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00105716};; Tyrosyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02006}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Tyrosine--tRNA ligase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CRB4_9RHIZ
tyrS; tyrosyl-tRNA synthetase
SCN18_14_9_16_R1_B_scaffold_2828_6
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4607..5137)
DNA (531bp) protein (177aa)
Putative transmembrane protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CVY4_9RHIZ
Putative transmembrane protein {ECO:0000313|EMBL:EYR79839.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCN18_14_9_16_R1_B_scaffold_2828_7
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5119..7920)
DNA (2802bp) protein (934aa)
Putative transmembrane protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CVY4_9RHIZ
Putative transmembrane protein {ECO:0000313|EMBL:EYR79839.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative transmembrane protein
SCN18_14_9_16_R1_B_scaffold_2828_8
SCNpilot_P_inoc_Rhodobacter_64_50, SCNpilot_P_inoc_Rhodobacter_64_50, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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8069..8536
DNA (468bp) protein (156aa)
Putative peroxiredoxin Bcp {ECO:0000313|EMBL:EYR79838.1}; EC=1.11.1.15 {ECO:0000313|EMBL:EYR79838.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Bacterioferritin comigratory protein n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9JVS1_AGRVS
bcp; bacterioferritin comigratory protein
SCN18_14_9_16_R1_B_scaffold_2828_9
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8559..9386
DNA (828bp) protein (276aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. IRBG74 RepID=U4PUU6_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR79837.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCN18_14_9_16_R1_B_scaffold_2828_10
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9485..10765
DNA (1281bp) protein (427aa)
Metalloendopeptidase-like membrane protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CDH1_9RHIZ
Metalloendopeptidase-like membrane protein {ECO:0000313|EMBL:EYR79836.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Metalloendopeptidase-like membrane protein
SCN18_14_9_16_R1_B_scaffold_2828_11
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10881..12458
DNA (1578bp) protein (526aa)
ATP-dependent RNA helicase RhlE {ECO:0000313|EMBL:EYR79835.1}; EC=3.6.4.13 {ECO:0000313|EMBL:EYR79835.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ATP-dependent RNA helicase RhlE n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CTD2_9RHIZ
DEAD/DEAH box type DNA/RNA helicase protein
SCN18_14_9_16_R1_B_scaffold_2828_12
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12468..12905
DNA (438bp) protein (146aa)
MutT-like protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D2F4_9RHIZ
MutT-like protein {ECO:0000313|EMBL:EYR79834.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
MutT like protein
SCN18_14_9_16_R1_B_scaffold_2828_13
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12878..13195)
DNA (318bp) protein (106aa)
Competence-specific transcriptional regulator n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EV11_9RHIZ
Competence-specific transcriptional regulator {ECO:0000313|EMBL:EYR79832.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
TfoX domain-containing protein
SCN18_14_9_16_R1_B_scaffold_2828_14
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13198..14013)
DNA (816bp) protein (272aa)
4-diphosphocytidyl-2C-methyl-D-erythritol synthase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LMM6_RHITR
L-seryl-tRNA(Ser) selenium transferase protein SelA {ECO:0000313|EMBL:EYR79831.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
4-diphosphocytidyl-2C-methyl-D-erythritol synthase
Displaying 14 items

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