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SCN18_26_2_15_R2_B_scaffold_2868

Search features with annotation key words

Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_26_2_15_R2_B_scaffold_2868_1
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..1081)
DNA (1080bp) protein (360aa)
gltB; glutamate synthase, large subunit (EC:1.4.1.13)
Glutamate synthase, large subunit {ECO:0000313|EMBL:CCB63978.1}; EC=1.4.1.13 {ECO:0000313|EMBL:CCB63978.1};; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
Glutamate synthase, large subunit n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JDA1_HYPSM
SCN18_26_2_15_R2_B_scaffold_2868_2
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1622..2077)
DNA (456bp) protein (152aa)
Heat shock chaperone n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JDA3_HYPSM
ibpA; heat shock chaperone
Heat shock chaperone {ECO:0000313|EMBL:CCB63980.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCN18_26_2_15_R2_B_scaffold_2868_3
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2286..3254
DNA (969bp) protein (323aa)
lysophospholipase L2 (pldB-like) (EC:3.1.1.5)
Putative lysophospholipase L2 (PldB-like) {ECO:0000313|EMBL:CCB63982.1}; EC=3.1.1.5 {ECO:0000313|EMBL:CCB63982.1};; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
Putative lysophospholipase L2 (PldB-like) n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JDA5_HYPSM
SCN18_26_2_15_R2_B_scaffold_2868_4
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3251..4063)
DNA (813bp) protein (271aa)
inositol mono-phosphatase (suhB-like) (EC:3.1.3.25)
Putative inositol mono-phosphatase (SuhB-like) {ECO:0000313|EMBL:CCB63983.1}; EC=3.1.3.25 {ECO:0000313|EMBL:CCB63983.1};; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
Putative inositol mono-phosphatase (SuhB-like) n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JDA6_HYPSM
SCN18_26_2_15_R2_B_scaffold_2868_5
SCNPILOT_CONT_750_P_Mesorhizobium_63_10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4617..5669)
DNA (1053bp) protein (351aa)
N-formylglutamate amidohydrolase (EC:3.5.1.68)
N-formylglutamate amidohydrolase (Beta-citryl-L-glutamate hydrolase) {ECO:0000313|EMBL:CCB63985.1}; EC=3.5.1.68 {ECO:0000313|EMBL:CCB63985.1};; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
N-formylglutamate amidohydrolase (Beta-citryl-L-glutamate hydrolase) n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JDA8_HYPSM
SCN18_26_2_15_R2_B_scaffold_2868_6
SCNPILOT_CONT_300_BF_Rhizobiales_67_6_partial, SCNPILOT_CONT_300_BF_Rhizobiales_67_6_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5811..6197
DNA (387bp) protein (129aa)
Putative response regulator receiver CheY-like protein n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JDA9_HYPSM
response regulator receiver; CheY-like protein
Putative response regulator receiver CheY-like protein {ECO:0000313|EMBL:CCB63986.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCN18_26_2_15_R2_B_scaffold_2868_trna_1
unknown

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6283..6354
DNA (72bp)
transferRNA Val
SCN18_26_2_15_R2_B_scaffold_2868_7
unknown

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6318..6956
DNA (639bp) protein (213aa)

This feature has no annotations

SCN18_26_2_15_R2_B_scaffold_2868_8
scnpilot_dereplicated_Plasmid_Sphingobium_1, scnpilot_dereplicated_Plasmid_Sphingobium_1, scnpilot_dereplicated_Plasmid_Sphingobium_1, scnpilot_dereplicated_Plasmid_Sphingobium_1, scnpilot_dereplicated_Plasmid_Sphingobium_1, Plasmid-like

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7009..9381
DNA (2373bp) protein (791aa)
TonB-dependent receptor n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B731_9RHIZ
TonB-dependent receptor {ECO:0000313|EMBL:AGK56356.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
TonB-dependent receptor
SCN18_26_2_15_R2_B_scaffold_2868_9
SCNPILOT_EXPT_1000_BF_Niastella_42_33, SCNPILOT_EXPT_1000_BF_Niastella_42_33, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(9490..10593)
DNA (1104bp) protein (368aa)
Putative uncharacterized protein n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JS92_HYPDA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADJ22351.1}; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB; 11706 / TK 0415).;"
SCN18_26_2_15_R2_B_scaffold_2868_10
SCNPILOT_CONT_750_P_Aeromonadales_61_5_9, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(10941..11630)
DNA (690bp) protein (230aa)
cysC; adenylylsulfate kinase (EC:2.7.1.25)
Adenylyl-sulfate kinase {ECO:0000256|HAMAP-Rule:MF_00065, ECO:0000256|RuleBase:RU004347}; EC=2.7.1.25 {ECO:0000256|HAMAP-Rule:MF_00065, ECO:0000256|RuleBase:RU004347};; APS kinase {ECO:0000256|HAMAP-Rule:MF_00065}; ATP adenosine-5'-phosphosulfate 3'-phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00065}; Adenosine-5'-phosphosulfate kinase {ECO:0000256|HAMAP-Rule:MF_00065}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
Adenylyl-sulfate kinase n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JCL5_HYPSM
SCN18_26_2_15_R2_B_scaffold_2868_11
SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17, SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11722..12570)
DNA (849bp) protein (283aa)
cysQ; 3'(2'),5'-bisphosphate nucleotidase (EC:3.1.3.7)
3'(2'),5'-bisphosphate nucleotidase CysQ {ECO:0000313|EMBL:CCB65204.1}; EC=3.1.3.7 {ECO:0000313|EMBL:CCB65204.1};; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
3'(2'),5'-bisphosphate nucleotidase CysQ n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8J7G7_HYPSM
SCN18_26_2_15_R2_B_scaffold_2868_12
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12630..13145)
DNA (516bp) protein (172aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B700_9RHIZ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGK56321.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
Displaying 13 items

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