ggKbase home page

SCN18_26_2_15_R2_B_scaffold_9054

Search features with annotation key words

Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_26_2_15_R2_B_scaffold_9054_1
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..138)
DNA (138bp) protein (46aa)
ubiB; ubiquinone biosynthesis protein 2-polyprenylphenol 6-hydroxylase (EC:1.14.13.-)
Probable protein kinase UbiB {ECO:0000256|SAAS:SAAS00063507}; EC=2.7.-.- {ECO:0000256|SAAS:SAAS00063486};; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
Ubiquinone biosynthesis protein, putative 2-polyprenylphenol 6-hydroxylase n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JHV9_HYPSM
SCN18_26_2_15_R2_B_scaffold_9054_2
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(377..670)
DNA (294bp) protein (98aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JHW0_HYPSM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCB68146.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCN18_26_2_15_R2_B_scaffold_9054_3
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(796..1635)
DNA (840bp) protein (280aa)
ubiE; ubiquinone/menaquinone biosynthesis methyltransferase ubiE (EC:2.1.1.-)
Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE {ECO:0000256|HAMAP-Rule:MF_01813}; EC=2.1.1.163 {ECO:0000256|HAMAP-Rule:MF_01813};; EC=2.1.1.201 {ECO:0000256|HAMAP-Rule:MF_01813};; 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase {ECO:0000256|HAMAP-Rule:MF_01813}; Demethylmenaquinone methyltransferase {ECO:0000256|HAMAP-Rule:MF_01813}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JHW1_HYPSM
SCN18_26_2_15_R2_B_scaffold_9054_4
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1772..2521
DNA (750bp) protein (250aa)
mutM; formamidopyrimidine-DNA glycosylase (EC:3.2.2.23)
Formamidopyrimidine-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00103, ECO:0000256|SAAS:SAAS00020852}; Short=Fapy-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00103};; EC=3.2.2.23 {ECO:0000256|HAMAP-Rule:MF_00103, ECO:0000313|EMBL:CCB68148.1};; DNA-(apurinic or apyrimidinic site) lyase MutM {ECO:0000256|HAMAP-Rule:MF_00103}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
Formamidopyrimidine-DNA glycosylase n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JHW2_HYPSM
SCN18_26_2_15_R2_B_scaffold_9054_5
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2535..3149)
DNA (615bp) protein (205aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JHW3_HYPSM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCB68149.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCN18_26_2_15_R2_B_scaffold_9054_6
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3187..3771)
DNA (585bp) protein (195aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JHW4_HYPSM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCB68150.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCN18_26_2_15_R2_B_scaffold_9054_7
CN-SCN_Mesorhizobium_20x, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


4058..4324
DNA (267bp) protein (89aa)
30S ribosomal protein S20 n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JHW5_HYPSM
rpsT; 30S ribosomal protein S20
30S ribosomal protein S20 {ECO:0000256|HAMAP-Rule:MF_00500}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
SCN18_26_2_15_R2_B_scaffold_9054_8
SCNPILOT_CONT_300_BF_Rhizobiales_67_6_partial, SCNPILOT_CONT_300_BF_Rhizobiales_67_6_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4966..5400
DNA (435bp) protein (145aa)
Rhodanese domain protein n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JHW8_HYPSM
rhodanese domain-containing protein
Rhodanese domain protein {ECO:0000313|EMBL:CCB68154.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCN18_26_2_15_R2_B_scaffold_9054_9
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5510..5665
DNA (156bp) protein (52aa)
Chromosomal replication initiator protein DnaA n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JPD9_HYPDA
chromosomal replication initiator protein DnaA
Chromosomal replication initiator protein DnaA {ECO:0000256|HAMAP-Rule:MF_00377, ECO:0000256|SAAS:SAAS00009621}; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB; 11706 / TK 0415).;"
Displaying 9 items

View Taxonomy