ggKbase | organisms

Consensus taxonomy: Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Metagenomic Context

Parent: SCN18_26_2_15_R2_B_UNK

Properties

Avg. coverage: 7.51 Longest contig: 19.64 Kbp Bin length: 3.00 Mbp GC content: 60.70 %

Contigs count: 770 Features count: 3390 rRNAs count: 0 tRNAs count: 21

Genome completeness

near complete RP 47 / 55 MC: 1 BSCG 49 / 51 MC: 2 ASCG 12 / 38 MC: 2

Description

Extracted from SCN18_26_2_15_R2_B_concoct_004

Displaying items 551-600 of 770 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
SCN18_26_2_15_R2_B_scaffold_27178 Species: CN-SCN_Devosia_27x (50%)	2	1564 bp	60.29	6.04	65.98
SCN18_26_2_15_R2_B_scaffold_32514 Species: SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial (50%)	2	1335 bp	65.24	7.08	94.38
SCN18_26_2_15_R2_B_scaffold_37835 Species: Hyphomicrobium sp. MC1 (50%)	2	1162 bp	56.28	5.68	99.40
SCN18_26_2_15_R2_B_scaffold_27948 Species: CN-SCN_Mesorhizobium_20x (100%)	2	1526 bp	62.39	7.37	90.83
SCN18_26_2_15_R2_B_scaffold_29664 Species: Hyphomicrobium sp. MC1 (50%)	2	1448 bp	60.01	6.53	86.19
SCN18_26_2_15_R2_B_scaffold_32009 Species: SCNPILOT_CONT_300_BF_Rhizobiales_62_47 (50%)	2	1354 bp	58.12	4.87	81.76
SCN18_26_2_15_R2_B_scaffold_15335 Species: SCNPILOT_CONT_300_BF_Rhizobiales_62_47 (100%)	2	2567 bp	61.59	6.84	93.61
SCN18_26_2_15_R2_B_scaffold_41824 Species: SCNPILOT_CONT_300_BF_Rhizobiales_67_6_partial (50%)	2	1058 bp	58.79	5.39	97.54
SCN18_26_2_15_R2_B_scaffold_15081 Species: SCNPILOT_CONT_1000_BF_Rhizobiales_65_79 (50%)	2	2601 bp	59.40	6.29	83.85
SCN18_26_2_15_R2_B_scaffold_43544 Species: SCNPILOT_CONT_300_BF_Rhizobiales_62_47 (50%)	2	1018 bp	61.69	6.34	90.18
SCN18_26_2_15_R2_B_scaffold_6583 Species: SCNPILOT_CONT_300_BF_Rhizobiales_62_47 (50%)	2	5182 bp	65.79	8.08	93.21
SCN18_26_2_15_R2_B_scaffold_12864 Species: SCNPILOT_CONT_300_BF_Rhizobiales_62_47 (100%)	2	2967 bp	61.51	7.99	95.45
SCN18_26_2_15_R2_B_scaffold_31441 Species: SCNPILOT_CONT_500_BF_Rhizobiales_64_17 (50%)	2	1377 bp	62.53	7.84	83.44
SCN18_26_2_15_R2_B_scaffold_26146 Species: Hyphomicrobium denitrificans (50%)	2	1621 bp	57.99	5.55	38.12
SCN18_26_2_15_R2_B_scaffold_7434 Species: SCNPILOT_CONT_500_BF_Rhizobiales_64_17 (50%)	2	4677 bp	62.05	11.32	98.46
SCN18_26_2_15_R2_B_scaffold_15092 Species: SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17 (50%)	2	2599 bp	58.45	6.75	75.72
SCN18_26_2_15_R2_B_scaffold_30676 Species: SCNPILOT_CONT_300_BF_Rhizobiales_67_6_partial (50%)	2	1408 bp	57.95	6.71	89.06
SCN18_26_2_15_R2_B_scaffold_28660 Species: Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15 (50%)	2	1492 bp	60.05	7.74	87.47
SCN18_26_2_15_R2_B_scaffold_31964 Species: SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7 (50%)	2	1355 bp	67.75	8.30	99.63
SCN18_26_2_15_R2_B_scaffold_30941 Species: Hyphomicrobium denitrificans (50%)	2	1396 bp	60.67	7.74	100.79
SCN18_26_2_15_R2_B_scaffold_12366 Species: SCNPILOT_CONT_300_BF_Rhizobiales_62_47 (100%)	2	3062 bp	61.63	7.45	98.07
SCN18_26_2_15_R2_B_scaffold_22049 Species: SCNPILOT_CONT_500_BF_Rhizobiales_63_22 (50%)	2	1877 bp	59.46	7.03	94.94
SCN18_26_2_15_R2_B_scaffold_33890 Species: SCNPILOT_CONT_1000_BF_Mesorhizobium_65_39 (100%)	2	1283 bp	56.12	5.38	99.38
SCN18_26_2_15_R2_B_scaffold_30179 Species: Hyphomicrobium sp. MC1 (50%)	2	1427 bp	63.98	7.25	91.03
SCN18_26_2_15_R2_B_scaffold_12884 Species: SCNPILOT_CONT_300_BF_Rhizobiales_62_47 (100%)	2	2963 bp	58.86	6.33	93.55
SCN18_26_2_15_R2_B_scaffold_36805 Species: CN-SCN_Mesorhizobium_20x (50%)	2	1193 bp	58.68	4.90	95.81
SCN18_26_2_15_R2_B_scaffold_40030 Species: SCNPILOT_SOLID2_TRIM150_Rhizobiales_67_9 (50%)	2	1101 bp	61.04	8.86	92.10
SCN18_26_2_15_R2_B_scaffold_43823 Species: SCNPILOT_EXPT_1000_BF_Devosia_65_23 (50%)	2	1012 bp	56.32	4.15	39.72
SCN18_26_2_15_R2_B_scaffold_34598 Species: SCNPILOT_CONT_1000_BF_Rhizobiales_65_18 (50%)	2	1260 bp	55.16	5.24	75.24
SCN18_26_2_15_R2_B_scaffold_27223 Species: Hyphomicrobium denitrificans (50%)	2	1561 bp	54.96	3.75	54.00
SCN18_26_2_15_R2_B_scaffold_34855 Species: SCNPILOT_CONT_500_BF_Rhizobiales_64_17 (50%)	2	1251 bp	60.03	6.12	95.20
SCN18_26_2_15_R2_B_scaffold_38873 Species: SCNPILOT_EXPT_1000_BF_Mesorhizobium_61_14 (50%)	2	1132 bp	61.75	5.96	100.18
SCN18_26_2_15_R2_B_scaffold_24321 Species: Hyphomicrobium sp. MC1 (50%)	2	1725 bp	62.90	6.87	94.43
SCN18_26_2_15_R2_B_scaffold_30699 Species: SCNPILOT_EXPT_1000_BF_Afipia_62_8 (50%)	2	1407 bp	61.48	6.93	96.80
SCN18_26_2_15_R2_B_scaffold_35069 Species: SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17 (50%)	2	1244 bp	61.74	6.87	94.29
SCN18_26_2_15_R2_B_scaffold_36046 Species: SCNPILOT_CONT_1000_BF_Mesorhizobium_65_39 (50%)	2	1214 bp	56.59	5.44	91.43
SCN18_26_2_15_R2_B_scaffold_19663 Species: SCNPILOT_SOLID2_TRIM150_Rhizobiales_67_9 (50%)	2	2071 bp	58.72	5.00	95.03
SCN18_26_2_15_R2_B_scaffold_9416 Species: SCNPILOT_CONT_300_BF_Rhizobiales_62_47 (100%)	2	3827 bp	58.79	6.31	88.19
SCN18_26_2_15_R2_B_scaffold_31472 Species: Hyphomicrobium denitrificans (50%)	2	1375 bp	56.95	4.69	99.93
SCN18_26_2_15_R2_B_scaffold_18531 Species: Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15 (50%)	2	2180 bp	63.07	7.29	87.11
SCN18_26_2_15_R2_B_scaffold_17444 Species: SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial (50%)	2	2295 bp	62.48	9.61	96.08
SCN18_26_2_15_R2_B_scaffold_34614 Species: SCNPILOT_CONT_1000_BF_Mesorhizobium_65_39 (50%)	2	1260 bp	60.63	6.90	61.19
SCN18_26_2_15_R2_B_scaffold_18791 Species: SCNPILOT_CONT_500_BF_Rhizobiales_64_17 (100%)	2	2157 bp	54.57	5.56	94.16
SCN18_26_2_15_R2_B_scaffold_14776 Species: SCNPILOT_CONT_300_BF_Rhizobiales_62_47 (100%)	2	2644 bp	59.27	7.32	90.77
SCN18_26_2_15_R2_B_scaffold_43842 Species: Hyphomicrobium sp. MC1 (50%)	2	1012 bp	55.24	6.52	37.94
SCN18_26_2_15_R2_B_scaffold_42799 Species: Hyphomicrobium denitrificans (50%)	2	1034 bp	56.48	6.82	72.82
SCN18_26_2_15_R2_B_scaffold_42289 Species: SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7 (50%)	2	1046 bp	58.22	8.17	95.51
SCN18_26_2_15_R2_B_scaffold_28952 Species: Hyphomicrobium sp. MC1 (100%)	2	1479 bp	59.84	4.67	92.90
SCN18_26_2_15_R2_B_scaffold_30209 Species: SCNPILOT_CONT_1000_BF_Mesorhizobium_65_39 (50%)	2	1426 bp	59.26	4.63	86.47
SCN18_26_2_15_R2_B_scaffold_18803 Species: SCNPILOT_CONT_500_BF_Rhizobiales_64_17 (50%)	2	2156 bp	61.87	8.21	82.51

Displaying items 551-600 of 770 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

Warning! This will delete the current organism (SCN18_26_2_15_R2_B_Rhizobiales_61_8) and add all its contigs / scaffolds to the organism you choose below

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SCN18_26_2_15_R2_B_Rhizobiales_61_8

Description

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

Merge with other organism

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