ggKbase | organisms

Consensus taxonomy: Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Metagenomic Context

Parent: SCN18_26_2_15_R2_B_UNK

Properties

Avg. coverage: 7.51 Longest contig: 19.64 Kbp Bin length: 3.00 Mbp GC content: 60.70 %

Contigs count: 770 Features count: 3390 rRNAs count: 0 tRNAs count: 21

Genome completeness

near complete RP 47 / 55 MC: 1 BSCG 49 / 51 MC: 2 ASCG 12 / 38 MC: 2

Description

Extracted from SCN18_26_2_15_R2_B_concoct_004

Displaying items 601-650 of 770 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
SCN18_26_2_15_R2_B_scaffold_44164 Species: SCNPILOT_CONT_300_BF_Rhizobiales_62_47 (50%)	2	1005 bp	61.09	7.76	71.64
SCN18_26_2_15_R2_B_scaffold_21164 Species: SCNPILOT_CONT_300_BF_Rhizobiales_62_47 (50%)	2	1946 bp	61.25	6.40	89.11
SCN18_26_2_15_R2_B_scaffold_29733 Species: SCNPILOT_EXPT_1000_BF_Afipia_62_8 (50%)	2	1445 bp	59.45	5.40	100.07
SCN18_26_2_15_R2_B_scaffold_29990 Species: Hyphomicrobium sp. MC1 (50%)	2	1435 bp	59.37	7.74	75.47
SCN18_26_2_15_R2_B_scaffold_25134 Species: Hyphomicrobium sp. MC1 (50%)	2	1677 bp	60.82	6.53	98.39
SCN18_26_2_15_R2_B_scaffold_26712 Species: SCNPILOT_CONT_1000_BF_Mesorhizobium_65_39 (100%)	2	1589 bp	60.79	6.61	88.36
SCN18_26_2_15_R2_B_scaffold_35097 Species: SCNPILOT_CONT_1000_BF_Mesorhizobium_65_39 (100%)	2	1243 bp	57.04	4.83	97.51
SCN18_26_2_15_R2_B_scaffold_17982 Species: Agrobacterium albertimagni_CN-SCN_Agrobacterium_19x (50%)	2	2235 bp	61.39	7.45	98.66
SCN18_26_2_15_R2_B_scaffold_42303 Species: Hyphomicrobium sp. MC1 (50%)	2	1046 bp	60.23	6.02	75.72
SCN18_26_2_15_R2_B_scaffold_29489 Species: SCNPILOT_SOLID2_TRIM150_Rhizobiales_67_9 (50%)	2	1455 bp	59.24	6.39	77.32
SCN18_26_2_15_R2_B_scaffold_14801 Species: SCNPILOT_SOLID2_TRIM150_Rhizobiales_67_9 (50%)	2	2641 bp	57.59	4.49	99.05
SCN18_26_2_15_R2_B_scaffold_32345 Species: SCNPILOT_CONT_500_BF_Rhizobiales_63_22 (50%)	2	1341 bp	59.43	6.49	99.11
SCN18_26_2_15_R2_B_scaffold_33938 Species: SCNPILOT_EXPT_1000_BF_Afipia_62_8 (50%)	2	1281 bp	59.64	6.09	77.99
SCN18_26_2_15_R2_B_scaffold_20594 Species: SCNPILOT_EXPT_1000_BF_Afipia_62_8 (50%)	2	1990 bp	64.02	9.27	100.10
SCN18_26_2_15_R2_B_scaffold_24362 Species: SCNPILOT_EXPT_1000_BF_Afipia_62_8 (50%)	2	1722 bp	62.66	6.71	81.36
SCN18_26_2_15_R2_B_scaffold_34645 Species: Hyphomicrobium sp. MC1 (50%)	2	1258 bp	57.63	5.01	83.70
SCN18_26_2_15_R2_B_scaffold_16070 Species: SCNPILOT_EXPT_1000_BF_Afipia_62_8 (50%)	2	2462 bp	60.19	7.68	105.65
SCN18_26_2_15_R2_B_scaffold_27271 Species: SCNPILOT_CONT_300_BF_Rhizobiales_62_47 (50%)	2	1559 bp	58.63	7.02	91.79
SCN18_26_2_15_R2_B_scaffold_18824 Species: SCNPILOT_CONT_300_BF_Rhizobiales_62_47 (50%)	2	2153 bp	62.01	8.08	77.33
SCN18_26_2_15_R2_B_scaffold_39129 Species: SCNPILOT_CONT_500_BF_Rhizobiales_64_17 (50%)	2	1125 bp	58.22	4.00	68.27
SCN18_26_2_15_R2_B_scaffold_17481 Species: SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7 (50%)	2	2290 bp	58.21	6.88	86.86
SCN18_26_2_15_R2_B_scaffold_21698 Species: SCNPILOT_EXPT_1000_BF_Afipia_62_8 (50%)	2	1902 bp	57.57	6.07	75.55
SCN18_26_2_15_R2_B_scaffold_13380 Species: SCNPILOT_CONT_500_BF_Rhizobiales_64_17 (50%)	2	2872 bp	60.17	8.25	98.61
SCN18_26_2_15_R2_B_scaffold_24629 Species: SCNPILOT_CONT_300_BF_Rhizobiales_62_47 (50%)	2	1706 bp	62.78	8.97	100.76
SCN18_26_2_15_R2_B_scaffold_19965 Species: SCNPILOT_CONT_300_BF_Rhizobiales_67_6_partial (50%)	2	2045 bp	64.30	7.70	85.97
SCN18_26_2_15_R2_B_scaffold_28472 Species: SCNPILOT_CONT_500_BF_Rhizobiales_64_17 (50%)	2	1502 bp	59.72	6.29	90.68
SCN18_26_2_15_R2_B_scaffold_13129 Species: SCNPILOT_CONT_300_BF_Rhizobiales_62_47 (100%)	2	2917 bp	56.12	5.25	71.07
SCN18_26_2_15_R2_B_scaffold_28730 Species: Hyphomicrobium sp. MC1 (50%)	2	1489 bp	63.06	6.25	88.45
SCN18_26_2_15_R2_B_scaffold_11292 Species: SCNPILOT_CONT_300_BF_Rhizobiales_62_47 (100%)	2	3297 bp	61.21	6.92	98.64
SCN18_26_2_15_R2_B_scaffold_17237 Species: Hyphomicrobium sp. MC1 (50%)	2	2318 bp	57.64	5.50	91.50
SCN18_26_2_15_R2_B_scaffold_22887 Species: SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial (50%)	2	1816 bp	61.29	7.52	94.16
SCN18_26_2_15_R2_B_scaffold_35384 Species: Hyphomicrobium sp. MC1 (50%)	2	1234 bp	58.10	5.35	55.92
SCN18_26_2_15_R2_B_scaffold_37179 Species: SCNPILOT_EXPT_1000_BF_Mesorhizobium_61_14 (50%)	2	1182 bp	60.58	6.09	91.12
SCN18_26_2_15_R2_B_scaffold_32883 Species: SCNPILOT_EXPT_1000_BF_Afipia_62_8 (50%)	2	1321 bp	62.38	6.59	89.25
SCN18_26_2_15_R2_B_scaffold_38173 Species: SCNPILOT_CONT_300_BF_Rhizobiales_62_47 (50%)	2	1152 bp	60.76	7.68	99.74
SCN18_26_2_15_R2_B_scaffold_11556 Species: SCNPILOT_CONT_300_BF_Rhizobiales_62_47 (100%)	2	3239 bp	59.12	6.53	96.79
SCN18_26_2_15_R2_B_scaffold_26496 Species: SCNPILOT_CONT_300_BF_Rhizobiales_67_6_partial (50%)	2	1602 bp	63.48	8.52	99.06
SCN18_26_2_15_R2_B_scaffold_22132 Species: SCNPILOT_SOLID2_TRIM150_Rhizobiales_67_9 (50%)	2	1871 bp	63.82	6.57	87.07
SCN18_26_2_15_R2_B_scaffold_22388 Species: SCNPILOT_CONT_300_BF_Rhizobiales_62_47 (100%)	2	2606 bp	56.25	4.60	89.68
SCN18_26_2_15_R2_B_scaffold_27045 Species: SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17 (50%)	2	1571 bp	55.25	5.54	89.18
SCN18_26_2_15_R2_B_scaffold_29783 Species: SCNPILOT_CONT_300_BF_Rhizobiales_62_47 (100%)	2	1443 bp	59.25	5.20	93.14
SCN18_26_2_15_R2_B_scaffold_30265 Species: SCNPILOT_EXPT_1000_BF_Afipia_62_8 (50%)	2	1424 bp	59.48	7.90	71.00
SCN18_26_2_15_R2_B_scaffold_19994 Species: SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17 (50%)	2	2042 bp	58.62	7.20	99.90
SCN18_26_2_15_R2_B_scaffold_9748 Species: Hyphomicrobium sp. MC1 (50%)	2	3715 bp	62.75	9.17	98.12
SCN18_26_2_15_R2_B_scaffold_18096 Species: Hyphomicrobium denitrificans (50%)	2	2223 bp	59.56	8.91	95.68
SCN18_26_2_15_R2_B_scaffold_20128 Species: SCNPILOT_CONT_300_BF_Rhizobiales_67_6_partial (100%)	2	2030 bp	61.08	7.02	102.41
SCN18_26_2_15_R2_B_scaffold_20130 Species: SCNPILOT_EXPT_1000_BF_Devosia_65_23 (50%)	2	2030 bp	63.40	6.43	96.50
SCN18_26_2_15_R2_B_scaffold_24666 Species: Hyphomicrobium sp. MC1 (50%)	2	1704 bp	59.74	6.25	78.35
SCN18_26_2_15_R2_B_scaffold_21996 Species: SCNPILOT_CONT_300_BF_Rhizobiales_67_6_partial (50%)	2	1881 bp	61.51	8.29	82.62
SCN18_26_2_15_R2_B_scaffold_25970 Species: Hyphomicrobium denitrificans (50%)	2	1631 bp	59.47	6.44	63.83

Displaying items 601-650 of 770 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

Warning! This will delete the current organism (SCN18_26_2_15_R2_B_Rhizobiales_61_8) and add all its contigs / scaffolds to the organism you choose below

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SCN18_26_2_15_R2_B_Rhizobiales_61_8

Description

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

Merge with other organism

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