ggKbase | organisms

Consensus taxonomy: Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Metagenomic Context

Parent: SCN18_26_2_15_R2_B_UNK

Properties

Avg. coverage: 7.51 Longest contig: 19.64 Kbp Bin length: 3.00 Mbp GC content: 60.70 %

Contigs count: 770 Features count: 3390 rRNAs count: 0 tRNAs count: 21

Genome completeness

near complete RP 47 / 55 MC: 1 BSCG 49 / 51 MC: 2 ASCG 12 / 38 MC: 2

Description

Extracted from SCN18_26_2_15_R2_B_concoct_004

Displaying items 101-150 of 770 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
SCN18_26_2_15_R2_B_scaffold_35069 Species: SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17 (50%)	2	1244 bp	61.74	6.87	94.29
SCN18_26_2_15_R2_B_scaffold_36046 Species: SCNPILOT_CONT_1000_BF_Mesorhizobium_65_39 (50%)	2	1214 bp	56.59	5.44	91.43
SCN18_26_2_15_R2_B_scaffold_19663 Species: SCNPILOT_SOLID2_TRIM150_Rhizobiales_67_9 (50%)	2	2071 bp	58.72	5.00	95.03
SCN18_26_2_15_R2_B_scaffold_9416 Species: SCNPILOT_CONT_300_BF_Rhizobiales_62_47 (100%)	2	3827 bp	58.79	6.31	88.19
SCN18_26_2_15_R2_B_scaffold_31472 Species: Hyphomicrobium denitrificans (50%)	2	1375 bp	56.95	4.69	99.93
SCN18_26_2_15_R2_B_scaffold_18531 Species: Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15 (50%)	2	2180 bp	63.07	7.29	87.11
SCN18_26_2_15_R2_B_scaffold_17444 Species: SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial (50%)	2	2295 bp	62.48	9.61	96.08
SCN18_26_2_15_R2_B_scaffold_34614 Species: SCNPILOT_CONT_1000_BF_Mesorhizobium_65_39 (50%)	2	1260 bp	60.63	6.90	61.19
SCN18_26_2_15_R2_B_scaffold_18791 Species: SCNPILOT_CONT_500_BF_Rhizobiales_64_17 (100%)	2	2157 bp	54.57	5.56	94.16
SCN18_26_2_15_R2_B_scaffold_14776 Species: SCNPILOT_CONT_300_BF_Rhizobiales_62_47 (100%)	2	2644 bp	59.27	7.32	90.77
SCN18_26_2_15_R2_B_scaffold_43842 Species: Hyphomicrobium sp. MC1 (50%)	2	1012 bp	55.24	6.52	37.94
SCN18_26_2_15_R2_B_scaffold_42799 Species: Hyphomicrobium denitrificans (50%)	2	1034 bp	56.48	6.82	72.82
SCN18_26_2_15_R2_B_scaffold_42289 Species: SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7 (50%)	2	1046 bp	58.22	8.17	95.51
SCN18_26_2_15_R2_B_scaffold_28952 Species: Hyphomicrobium sp. MC1 (100%)	2	1479 bp	59.84	4.67	92.90
SCN18_26_2_15_R2_B_scaffold_30209 Species: SCNPILOT_CONT_1000_BF_Mesorhizobium_65_39 (50%)	2	1426 bp	59.26	4.63	86.47
SCN18_26_2_15_R2_B_scaffold_18803 Species: SCNPILOT_CONT_500_BF_Rhizobiales_64_17 (50%)	2	2156 bp	61.87	8.21	82.51
SCN18_26_2_15_R2_B_scaffold_44164 Species: SCNPILOT_CONT_300_BF_Rhizobiales_62_47 (50%)	2	1005 bp	61.09	7.76	71.64
SCN18_26_2_15_R2_B_scaffold_21164 Species: SCNPILOT_CONT_300_BF_Rhizobiales_62_47 (50%)	2	1946 bp	61.25	6.40	89.11
SCN18_26_2_15_R2_B_scaffold_29733 Species: SCNPILOT_EXPT_1000_BF_Afipia_62_8 (50%)	2	1445 bp	59.45	5.40	100.07
SCN18_26_2_15_R2_B_scaffold_29990 Species: Hyphomicrobium sp. MC1 (50%)	2	1435 bp	59.37	7.74	75.47
SCN18_26_2_15_R2_B_scaffold_25134 Species: Hyphomicrobium sp. MC1 (50%)	2	1677 bp	60.82	6.53	98.39
SCN18_26_2_15_R2_B_scaffold_26712 Species: SCNPILOT_CONT_1000_BF_Mesorhizobium_65_39 (100%)	2	1589 bp	60.79	6.61	88.36
SCN18_26_2_15_R2_B_scaffold_35097 Species: SCNPILOT_CONT_1000_BF_Mesorhizobium_65_39 (100%)	2	1243 bp	57.04	4.83	97.51
SCN18_26_2_15_R2_B_scaffold_17982 Species: Agrobacterium albertimagni_CN-SCN_Agrobacterium_19x (50%)	2	2235 bp	61.39	7.45	98.66
SCN18_26_2_15_R2_B_scaffold_42303 Species: Hyphomicrobium sp. MC1 (50%)	2	1046 bp	60.23	6.02	75.72
SCN18_26_2_15_R2_B_scaffold_29489 Species: SCNPILOT_SOLID2_TRIM150_Rhizobiales_67_9 (50%)	2	1455 bp	59.24	6.39	77.32
SCN18_26_2_15_R2_B_scaffold_14801 Species: SCNPILOT_SOLID2_TRIM150_Rhizobiales_67_9 (50%)	2	2641 bp	57.59	4.49	99.05
SCN18_26_2_15_R2_B_scaffold_32345 Species: SCNPILOT_CONT_500_BF_Rhizobiales_63_22 (50%)	2	1341 bp	59.43	6.49	99.11
SCN18_26_2_15_R2_B_scaffold_33938 Species: SCNPILOT_EXPT_1000_BF_Afipia_62_8 (50%)	2	1281 bp	59.64	6.09	77.99
SCN18_26_2_15_R2_B_scaffold_20594 Species: SCNPILOT_EXPT_1000_BF_Afipia_62_8 (50%)	2	1990 bp	64.02	9.27	100.10
SCN18_26_2_15_R2_B_scaffold_24362 Species: SCNPILOT_EXPT_1000_BF_Afipia_62_8 (50%)	2	1722 bp	62.66	6.71	81.36
SCN18_26_2_15_R2_B_scaffold_34645 Species: Hyphomicrobium sp. MC1 (50%)	2	1258 bp	57.63	5.01	83.70
SCN18_26_2_15_R2_B_scaffold_16070 Species: SCNPILOT_EXPT_1000_BF_Afipia_62_8 (50%)	2	2462 bp	60.19	7.68	105.65
SCN18_26_2_15_R2_B_scaffold_27271 Species: SCNPILOT_CONT_300_BF_Rhizobiales_62_47 (50%)	2	1559 bp	58.63	7.02	91.79
SCN18_26_2_15_R2_B_scaffold_18824 Species: SCNPILOT_CONT_300_BF_Rhizobiales_62_47 (50%)	2	2153 bp	62.01	8.08	77.33
SCN18_26_2_15_R2_B_scaffold_39129 Species: SCNPILOT_CONT_500_BF_Rhizobiales_64_17 (50%)	2	1125 bp	58.22	4.00	68.27
SCN18_26_2_15_R2_B_scaffold_17481 Species: SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7 (50%)	2	2290 bp	58.21	6.88	86.86
SCN18_26_2_15_R2_B_scaffold_21698 Species: SCNPILOT_EXPT_1000_BF_Afipia_62_8 (50%)	2	1902 bp	57.57	6.07	75.55
SCN18_26_2_15_R2_B_scaffold_13380 Species: SCNPILOT_CONT_500_BF_Rhizobiales_64_17 (50%)	2	2872 bp	60.17	8.25	98.61
SCN18_26_2_15_R2_B_scaffold_24629 Species: SCNPILOT_CONT_300_BF_Rhizobiales_62_47 (50%)	2	1706 bp	62.78	8.97	100.76
SCN18_26_2_15_R2_B_scaffold_19965 Species: SCNPILOT_CONT_300_BF_Rhizobiales_67_6_partial (50%)	2	2045 bp	64.30	7.70	85.97
SCN18_26_2_15_R2_B_scaffold_28472 Species: SCNPILOT_CONT_500_BF_Rhizobiales_64_17 (50%)	2	1502 bp	59.72	6.29	90.68
SCN18_26_2_15_R2_B_scaffold_13129 Species: SCNPILOT_CONT_300_BF_Rhizobiales_62_47 (100%)	2	2917 bp	56.12	5.25	71.07
SCN18_26_2_15_R2_B_scaffold_28730 Species: Hyphomicrobium sp. MC1 (50%)	2	1489 bp	63.06	6.25	88.45
SCN18_26_2_15_R2_B_scaffold_11292 Species: SCNPILOT_CONT_300_BF_Rhizobiales_62_47 (100%)	2	3297 bp	61.21	6.92	98.64
SCN18_26_2_15_R2_B_scaffold_17237 Species: Hyphomicrobium sp. MC1 (50%)	2	2318 bp	57.64	5.50	91.50
SCN18_26_2_15_R2_B_scaffold_22887 Species: SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial (50%)	2	1816 bp	61.29	7.52	94.16
SCN18_26_2_15_R2_B_scaffold_35384 Species: Hyphomicrobium sp. MC1 (50%)	2	1234 bp	58.10	5.35	55.92
SCN18_26_2_15_R2_B_scaffold_37179 Species: SCNPILOT_EXPT_1000_BF_Mesorhizobium_61_14 (50%)	2	1182 bp	60.58	6.09	91.12
SCN18_26_2_15_R2_B_scaffold_32883 Species: SCNPILOT_EXPT_1000_BF_Afipia_62_8 (50%)	2	1321 bp	62.38	6.59	89.25

Displaying items 101-150 of 770 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

Warning! This will delete the current organism (SCN18_26_2_15_R2_B_Rhizobiales_61_8) and add all its contigs / scaffolds to the organism you choose below

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Other organism

SCN18_26_2_15_R2_B_Rhizobiales_61_8

Description

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

Merge with other organism

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