ggKbase | organisms

Consensus taxonomy: Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Metagenomic Context

Parent: SCN18_26_2_15_R2_B_UNK

Properties

Avg. coverage: 7.51 Longest contig: 19.64 Kbp Bin length: 3.00 Mbp GC content: 60.70 %

Contigs count: 770 Features count: 3390 rRNAs count: 0 tRNAs count: 21

Genome completeness

near complete RP 47 / 55 MC: 1 BSCG 49 / 51 MC: 2 ASCG 12 / 38 MC: 2

Description

Extracted from SCN18_26_2_15_R2_B_concoct_004

Displaying items 151-200 of 770 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
SCN18_26_2_15_R2_B_scaffold_38173 Species: SCNPILOT_CONT_300_BF_Rhizobiales_62_47 (50%)	2	1152 bp	60.76	7.68	99.74
SCN18_26_2_15_R2_B_scaffold_11556 Species: SCNPILOT_CONT_300_BF_Rhizobiales_62_47 (100%)	2	3239 bp	59.12	6.53	96.79
SCN18_26_2_15_R2_B_scaffold_26496 Species: SCNPILOT_CONT_300_BF_Rhizobiales_67_6_partial (50%)	2	1602 bp	63.48	8.52	99.06
SCN18_26_2_15_R2_B_scaffold_22132 Species: SCNPILOT_SOLID2_TRIM150_Rhizobiales_67_9 (50%)	2	1871 bp	63.82	6.57	87.07
SCN18_26_2_15_R2_B_scaffold_22388 Species: SCNPILOT_CONT_300_BF_Rhizobiales_62_47 (100%)	2	2606 bp	56.25	4.60	89.68
SCN18_26_2_15_R2_B_scaffold_27045 Species: SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17 (50%)	2	1571 bp	55.25	5.54	89.18
SCN18_26_2_15_R2_B_scaffold_29783 Species: SCNPILOT_CONT_300_BF_Rhizobiales_62_47 (100%)	2	1443 bp	59.25	5.20	93.14
SCN18_26_2_15_R2_B_scaffold_30265 Species: SCNPILOT_EXPT_1000_BF_Afipia_62_8 (50%)	2	1424 bp	59.48	7.90	71.00
SCN18_26_2_15_R2_B_scaffold_19994 Species: SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17 (50%)	2	2042 bp	58.62	7.20	99.90
SCN18_26_2_15_R2_B_scaffold_9748 Species: Hyphomicrobium sp. MC1 (50%)	2	3715 bp	62.75	9.17	98.12
SCN18_26_2_15_R2_B_scaffold_18096 Species: Hyphomicrobium denitrificans (50%)	2	2223 bp	59.56	8.91	95.68
SCN18_26_2_15_R2_B_scaffold_20128 Species: SCNPILOT_CONT_300_BF_Rhizobiales_67_6_partial (100%)	2	2030 bp	61.08	7.02	102.41
SCN18_26_2_15_R2_B_scaffold_20130 Species: SCNPILOT_EXPT_1000_BF_Devosia_65_23 (50%)	2	2030 bp	63.40	6.43	96.50
SCN18_26_2_15_R2_B_scaffold_24666 Species: Hyphomicrobium sp. MC1 (50%)	2	1704 bp	59.74	6.25	78.35
SCN18_26_2_15_R2_B_scaffold_21996 Species: SCNPILOT_CONT_300_BF_Rhizobiales_67_6_partial (50%)	2	1881 bp	61.51	8.29	82.62
SCN18_26_2_15_R2_B_scaffold_25970 Species: Hyphomicrobium denitrificans (50%)	2	1631 bp	59.47	6.44	63.83
SCN18_26_2_15_R2_B_scaffold_14859 Species: SCNPILOT_CONT_300_BF_Rhizobiales_62_47 (100%)	2	2631 bp	57.66	6.61	98.18
SCN18_26_2_15_R2_B_scaffold_35932 Species: SCNPILOT_CONT_750_P_Mesorhizobium_63_10 (50%)	2	1217 bp	59.74	7.03	97.86
SCN18_26_2_15_R2_B_scaffold_15216 Species: SCNPILOT_EXPT_1000_BF_Mesorhizobium_61_14 (50%)	2	2583 bp	59.85	5.11	77.82
SCN18_26_2_15_R2_B_scaffold_14874 Species: Hyphomicrobium sp. MC1 (50%)	2	2630 bp	60.23	7.24	90.91
SCN18_26_2_15_R2_B_scaffold_52902 Species: SCNPILOT_CONT_500_BF_Rhizobiales_63_22 (50%)	2	1435 bp	56.24	6.17	109.34
SCN18_26_2_15_R2_B_scaffold_20158 Species: SCNPILOT_CONT_500_BF_Rhizobiales_63_22 (50%)	2	2027 bp	62.85	8.58	100.05
SCN18_26_2_15_R2_B_scaffold_20670 Species: SCNPILOT_CONT_500_BF_Rhizobiales_64_17 (50%)	2	1985 bp	60.86	6.27	95.52
SCN18_26_2_15_R2_B_scaffold_39968 Species: Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15 (50%)	2	1103 bp	58.48	5.17	50.77
SCN18_26_2_15_R2_B_scaffold_20415 Species: SCNPILOT_CONT_1000_BF_Rhizobiales_65_18 (50%)	2	2004 bp	58.68	7.49	79.19
SCN18_26_2_15_R2_B_scaffold_15236 Species: SCNPILOT_CONT_300_BF_Rhizobiales_62_47 (100%)	2	2580 bp	63.49	7.09	92.21
SCN18_26_2_15_R2_B_scaffold_35190 Species: SCNPILOT_CONT_1000_BF_Rhizobiales_65_79 (50%)	2	1859 bp	59.12	6.29	63.42
SCN18_26_2_15_R2_B_scaffold_28287 Species: SCNPILOT_CONT_500_BF_Rhizobiales_63_22 (50%)	2	1510 bp	63.25	7.35	96.76
SCN18_26_2_15_R2_B_scaffold_39210 Species: CN-SCN_Devosia_27x (50%)	2	1123 bp	54.85	3.07	87.09
SCN18_26_2_15_R2_B_scaffold_32689 Species: SCNPILOT_CONT_1000_BF_Mesorhizobium_65_39 (100%)	2	1329 bp	55.83	4.29	93.91
SCN18_26_2_15_R2_B_scaffold_13969 Species: CN-SCN_Mesorhizobium_20x (50%)	2	2775 bp	60.14	8.27	83.03
SCN18_26_2_15_R2_B_scaffold_43699 Species: SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7 (50%)	2	1015 bp	62.56	8.72	100.20
SCN18_26_2_15_R2_B_scaffold_21011 Species: SCNPILOT_CONT_750_P_Mesorhizobium_63_10 (50%)	2	1958 bp	58.07	7.35	99.59
SCN18_26_2_15_R2_B_scaffold_29327 Species: SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17 (50%)	2	1462 bp	56.02	5.23	95.42
SCN18_26_2_15_R2_B_scaffold_22198 Species: CN-SCN_Mesorhizobium_20x (100%)	2	1867 bp	62.19	8.84	100.11
SCN18_26_2_15_R2_B_scaffold_23222 Species: Agrobacterium albertimagni_CN-SCN_Agrobacterium_19x (50%)	2	1794 bp	61.71	8.61	87.29
SCN18_26_2_15_R2_B_scaffold_17319 Species: SCNPILOT_CONT_300_BF_Rhizobiales_62_47 (50%)	2	2310 bp	64.07	7.21	93.51
SCN18_26_2_15_R2_B_scaffold_25248 Species: SCNPILOT_CONT_300_BF_Rhizobiales_62_47 (50%)	2	1671 bp	58.47	5.30	99.64
SCN18_26_2_15_R2_B_scaffold_11632 Species: SCNPILOT_CONT_1000_BF_Mesorhizobium_65_39 (50%)	2	3220 bp	63.29	7.27	77.05
SCN18_26_2_15_R2_B_scaffold_19544 Species: Hyphomicrobium sp. MC1 (50%)	2	2081 bp	61.99	6.85	83.33
SCN18_26_2_15_R2_B_scaffold_30329 Species: SCNPILOT_EXPT_1000_BF_Devosia_62_26 (50%)	2	1422 bp	55.63	4.54	71.10
SCN18_26_2_15_R2_B_scaffold_41746 Species: SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial (50%)	2	1060 bp	61.42	6.65	85.75
SCN18_26_2_15_R2_B_scaffold_21029 Species: SCNPILOT_EXPT_1000_BF_Devosia_62_26 (50%)	2	1956 bp	60.84	7.36	101.07
SCN18_26_2_15_R2_B_scaffold_30079 Species: SCNPILOT_CONT_500_BF_Rhizobiales_63_22 (50%)	2	1432 bp	62.85	8.59	100.14
SCN18_26_2_15_R2_B_scaffold_29600 Species: SCNPILOT_CONT_750_P_Mesorhizobium_63_10 (50%)	2	1451 bp	58.65	7.44	78.77
SCN18_26_2_15_R2_B_scaffold_42937 Species: SCNPILOT_CONT_1000_BF_Rhizobiales_65_79 (50%)	2	1030 bp	62.14	8.30	97.86
SCN18_26_2_15_R2_B_scaffold_15018 Species: Hyphomicrobium denitrificans (50%)	2	2608 bp	57.13	5.75	99.96
SCN18_26_2_15_R2_B_scaffold_33291 Species: SCNPILOT_CONT_1000_BF_Mesorhizobium_65_39 (100%)	2	1305 bp	59.23	7.59	95.40
SCN18_26_2_15_R2_B_scaffold_40708 Species: SCNPILOT_SOLID2_TRIM150_Afipia_61_20 (50%)	2	1084 bp	58.86	5.54	93.54
SCN18_26_2_15_R2_B_scaffold_8149 Species: SCNPILOT_CONT_300_BF_Rhizobiales_62_47 (100%)	2	4319 bp	61.29	9.55	98.15

Displaying items 151-200 of 770 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

Warning! This will delete the current organism (SCN18_26_2_15_R2_B_Rhizobiales_61_8) and add all its contigs / scaffolds to the organism you choose below

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SCN18_26_2_15_R2_B_Rhizobiales_61_8

Description

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

Merge with other organism

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