ggKbase home page

SCN18_30_10_14_R2_B_scaffold_3678

Search features with annotation key words

Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R2_B_scaffold_3678_1
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

247..1485
DNA (1239bp) protein (413aa)
D-3-phosphoglycerate dehydrogenase (EC:1.1.1.95)
D-3-phosphoglycerate dehydrogenase n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2LLZ3_9RHIZ
D-3-phosphoglycerate dehydrogenase {ECO:0000313|EMBL:EKF18789.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
SCN18_30_10_14_R2_B_scaffold_3678_2
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1498..1845
DNA (348bp) protein (116aa)
D-3-phosphoglycerate dehydrogenase n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YAC8_9RHIZ
D-3-phosphoglycerate dehydrogenase {ECO:0000313|EMBL:EHH11283.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
D-3-phosphoglycerate dehydrogenase
SCN18_30_10_14_R2_B_scaffold_3678_3
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1891..2796)
DNA (906bp) protein (302aa)
Membrane protein n=1 Tax=Mesorhizobium sp. LNJC394B00 RepID=V7G4K5_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:AID33006.1}; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakuii 7653R.;"
hypothetical protein
SCN18_30_10_14_R2_B_scaffold_3678_4
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3028..4326
DNA (1299bp) protein (433aa)
Adenylosuccinate synthetase {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520}; Short=AMPSase {ECO:0000256|HAMAP-Rule:MF_00011};; Short=AdSS {ECO:0000256|HAMAP-Rule:MF_00011};; EC=6.3.4.4 {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520};; IMP--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00011}; TaxID=1287074 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L103C105A0.;"
adenylosuccinate synthetase (EC:6.3.4.4)
UPI0003CEFF53 related cluster n=1 Tax=unknown RepID=UPI0003CEFF53
SCN18_30_10_14_R2_B_scaffold_3678_5
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4389..6089
DNA (1701bp) protein (567aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI00031753FD
Uncharacterized protein {ECO:0000313|EMBL:EKF18792.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
hypothetical protein
SCN18_30_10_14_R2_B_scaffold_3678_6
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6197..7108)
DNA (912bp) protein (304aa)
RNA polymerase sigma 70 n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002EB63DE
RNA polymerase sigma factor RpoH {ECO:0000256|HAMAP-Rule:MF_00961}; RNA polymerase sigma-32 factor {ECO:0000256|HAMAP-Rule:MF_00961}; TaxID=1287074 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L103C105A0.;"
RNA polymerase sigma-32 subunit RpoH
SCN18_30_10_14_R2_B_scaffold_3678_7
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7275..8309)
DNA (1035bp) protein (345aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=483179 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Brucella.;" source="Brucella canis (strain ATCC 23365 / NCTC 10854).;"
Pseudouridine synthase n=11 Tax=Brucella abortus RepID=N7AA92_BRUAO
ribosomal large subunit pseudouridine synthase D
SCN18_30_10_14_R2_B_scaffold_3678_8
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8334..8717
DNA (384bp) protein (128aa)
Putative fimbrial subunit PilA n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8T7F9_MESCW
Putative fimbrial subunit PilA {ECO:0000313|EMBL:CDX34539.1}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
fimbrial subunit PilA
SCN18_30_10_14_R2_B_scaffold_3678_trna_1
unknown

Not on your lists

8831..8902
DNA (72bp)
transferRNA Glu
SCN18_30_10_14_R2_B_scaffold_3678_9
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8979..9152)
DNA (174bp) protein (58aa)
LysR family transcriptional regulator YeiE n=1 Tax=Rhodovulum sp. PH10 RepID=J6LE97_9RHOB
LysR family transcriptional regulator YeiE {ECO:0000313|EMBL:EJW11473.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
LysR family transcriptional regulator
Displaying 10 items

View Taxonomy