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SCN18_30_10_14_R2_B_scaffold_3317_7

Organism: SCN18_30_10_14_R2_B_Rhizobiales_63_8

near complete RP 44 / 55 MC: 5 BSCG 48 / 51 MC: 8 ASCG 11 / 38 MC: 3
Location: comp(5995..6627)

Top 3 Functional Annotations

Value Algorithm Source
UPI0003CE1875 related cluster n=1 Tax=unknown RepID=UPI0003CE1875 similarity UNIREF
DB: UNIREF100
  • Identity: 62.3
  • Coverage: 204.0
  • Bit_score: 231
  • Evalue 4.20e-58
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=1287252 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC252B00.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 62.3
  • Coverage: 204.0
  • Bit_score: 231
  • Evalue 5.80e-58
sigma-70 family RNA polymerase sigma factor similarity KEGG
DB: KEGG
  • Identity: 62.4
  • Coverage: 194.0
  • Bit_score: 229
  • Evalue 7.60e-58

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Taxonomy

SCNPILOT_EXPT_1000_BF_Mesorhizobium_61_14 → Mesorhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 633
ATGAACGACAAGGTTTTAGCGGTCGTCTTCGCCGATGATTCCGACTTGGTGCAACGGGCGCTAGCGCGCGATGCCTGCTCGTTCCGCACTATAATGAAAAAGCACAACCAGCGCCTCTATCGGATTGCCAGAAGCATGATCGGCAACGAGAGCGACGCCGAAGACATCGTGCAGGAAGCTTATGCGCGCGCCTTCACTCATCTTGACGGTTTTCACGGACAATCGTCGCTGGCGACATGGCTGACGCGCATCGTGATCAACGAGACGCTGGGCAGGCTGCGCAAGCGGCGGAGGCGTACAATGGTCGTCGTGCCAATGGGCTCAACTGACGAAGCTCGCGCCATCCGGTTTCCGCATAACGCAAGCCATGATGATCCGGAACGGACCACAGCGGAACGACAGACCCTGCTGCTCGTCGAGCAAACGATCGCGAACCTGCCCGATATCTATCGAAAAGTCTTCGTCGCTCGCGTCATCGACGGCATAGACATCCTGGAAACGGCCGCGTATCTGGGCATCCGCCCCGAGACGGTCAAGACCCGGCTGCGTCGCGCGCGCGGACTGGTGCGCCAGGCATTGGACGAACGGACCAACACGCCGCCTTTCAGCAGCGTGCCGCAACATCTCCACTGA
PROTEIN sequence
Length: 211
MNDKVLAVVFADDSDLVQRALARDACSFRTIMKKHNQRLYRIARSMIGNESDAEDIVQEAYARAFTHLDGFHGQSSLATWLTRIVINETLGRLRKRRRRTMVVVPMGSTDEARAIRFPHNASHDDPERTTAERQTLLLVEQTIANLPDIYRKVFVARVIDGIDILETAAYLGIRPETVKTRLRRARGLVRQALDERTNTPPFSSVPQHLH*