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2019_SCN_bioreactor_t2_biofilm_scaffold_14546

Search features with annotation key words

Displaying items 1-30 of 89 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t2_biofilm_scaffold_14546_1
Herbaspirillum frisingense, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..884
DNA (882bp) protein (294aa)
Inner membrane protein n=1 Tax=Herbaspirillum frisingense GSF30 RepID=R0FKT2_9BURK
Inner membrane protein {ECO:0000313|EMBL:EOA02493.1}; TaxID=864073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum frisingense GSF30.;"
inner membrane protein
2019_SCN_bioreactor_t2_biofilm_scaffold_14546_2
Herbaspirillum frisingense, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

857..1048
DNA (192bp) protein (64aa)
Inner membrane protein n=1 Tax=Herbaspirillum frisingense GSF30 RepID=R0FKT2_9BURK
Inner membrane protein {ECO:0000313|EMBL:EOA02493.1}; TaxID=864073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum frisingense GSF30.;"
inner membrane protein
2019_SCN_bioreactor_t2_biofilm_scaffold_14546_3
Herbaspirillum frisingense, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1124..1603
DNA (480bp) protein (160aa)
Cro/CI family transcription regulator n=1 Tax=Herbaspirillum frisingense GSF30 RepID=R0G0N0_9BURK
Cro/CI family transcription regulator {ECO:0000313|EMBL:EOA02492.1}; TaxID=864073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum frisingense GSF30.;"
Cro/CI family transcription regulator
2019_SCN_bioreactor_t2_biofilm_scaffold_14546_4
Herbaspirillum frisingense, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1683..3005)
DNA (1323bp) protein (441aa)
Hemolysin protein n=1 Tax=Herbaspirillum frisingense GSF30 RepID=R0E9V9_9BURK
Hemolysin protein {ECO:0000313|EMBL:EOA02491.1}; TaxID=864073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum frisingense GSF30.;"
hemolysin protein
2019_SCN_bioreactor_t2_biofilm_scaffold_14546_5
Burkholderia gladioli, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3156..4067)
DNA (912bp) protein (304aa)
Transcriptional regulator n=1 Tax=Burkholderia gladioli (strain BSR3) RepID=F2LPG8_BURGS
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:AEA65111.1}; TaxID=999541 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia gladioli (strain BSR3).;"
2019_SCN_bioreactor_t2_biofilm_scaffold_14546_6
Burkholderia gladioli, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4201..4881
DNA (681bp) protein (227aa)
NonF-related protein n=1 Tax=Burkholderia gladioli (strain BSR3) RepID=F2LPG9_BURGS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJW99298.1}; TaxID=28095 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia gladioli (Pseudomonas marginata) (Phytomonas marginata).;"
2019_SCN_bioreactor_t2_biofilm_scaffold_14546_7
Burkholderia gladioli, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4878..5186
DNA (309bp) protein (103aa)
hypothetical protein n=1 Tax=Massilia niastensis RepID=UPI000375A87D
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEA65113.1}; TaxID=999541 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia gladioli (strain BSR3).;"
2019_SCN_bioreactor_t2_biofilm_scaffold_14546_8
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5478..5867)
DNA (390bp) protein (130aa)
Uncharacterized protein n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5XWP6_RAMTT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEG94190.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
2019_SCN_bioreactor_t2_biofilm_scaffold_14546_9
Herbaspirillum frisingense, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5984..6991)
DNA (1008bp) protein (336aa)
adh; zinc-containing alcohol dehydrogenase (EC:1.1.1.1)
Zinc-containing alcohol dehydrogenase n=1 Tax=Herbaspirillum frisingense GSF30 RepID=R0EAS0_9BURK
Zinc-containing alcohol dehydrogenase {ECO:0000313|EMBL:EOA02490.1}; TaxID=864073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum frisingense GSF30.;"
2019_SCN_bioreactor_t2_biofilm_scaffold_14546_10
Herbaspirillum frisingense, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7164..8732)
DNA (1569bp) protein (523aa)
MocR family transcription regulator protein n=1 Tax=Herbaspirillum frisingense GSF30 RepID=R0FXQ3_9BURK
MocR family transcription regulator protein {ECO:0000313|EMBL:EOA02489.1}; TaxID=864073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum frisingense GSF30.;"
MocR family transcription regulator protein
2019_SCN_bioreactor_t2_biofilm_scaffold_14546_11
Herbaspirillum frisingense, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8859..10139
DNA (1281bp) protein (427aa)
goaG; 4-aminobutyrate aminotransferase (EC:2.6.1.19)
4-aminobutyrate aminotransferase n=1 Tax=Herbaspirillum frisingense GSF30 RepID=R0FKS6_9BURK
4-aminobutyrate aminotransferase {ECO:0000313|EMBL:EOA02488.1}; TaxID=864073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum frisingense GSF30.;"
2019_SCN_bioreactor_t2_biofilm_scaffold_14546_12
Herbaspirillum frisingense, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10237..11391
DNA (1155bp) protein (385aa)
Polyamine-transporting ATPase {ECO:0000256|SAAS:SAAS00083160}; EC=3.6.3.31 {ECO:0000256|SAAS:SAAS00083160};; TaxID=864073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum frisingense GSF30.;"
Spermidine/putrescine ABC transporter ATPase n=1 Tax=Herbaspirillum frisingense GSF30 RepID=R0G0M8_9BURK
potA; spermidine/putrescine ABC transporter ATPase
2019_SCN_bioreactor_t2_biofilm_scaffold_14546_13
Herbaspirillum frisingense, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11554..12597
DNA (1044bp) protein (348aa)
Spermidine/putrescine ABC transporter periplasmic protein n=1 Tax=Herbaspirillum frisingense GSF30 RepID=R0E9V6_9BURK
Spermidine/putrescine ABC transporter periplasmic protein {ECO:0000313|EMBL:EOA02486.1}; TaxID=864073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum frisingense GSF30.;"
potD; spermidine/putrescine ABC transporter periplasmic protein
2019_SCN_bioreactor_t2_biofilm_scaffold_14546_14
Herbaspirillum frisingense, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12821..14104
DNA (1284bp) protein (428aa)
Spermidine/putrescine ABC transporter permease n=1 Tax=Herbaspirillum frisingense GSF30 RepID=R0EAR8_9BURK
Spermidine/putrescine ABC transporter permease {ECO:0000313|EMBL:EOA02485.1}; TaxID=864073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum frisingense GSF30.;"
potH; spermidine/putrescine ABC transporter permease
2019_SCN_bioreactor_t2_biofilm_scaffold_14546_15
Herbaspirillum frisingense, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14157..14990
DNA (834bp) protein (278aa)
Spermidine/putrescine ABC transporter permease n=1 Tax=Herbaspirillum frisingense GSF30 RepID=R0FXP9_9BURK
Spermidine/putrescine ABC transporter permease {ECO:0000313|EMBL:EOA02484.1}; TaxID=864073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum frisingense GSF30.;"
potC; spermidine/putrescine ABC transporter permease
2019_SCN_bioreactor_t2_biofilm_scaffold_14546_16
Herbaspirillum frisingense, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15030..16487
DNA (1458bp) protein (486aa)
gabD1; NADP-dependent succinate-semialdehyde dehydrogenase (EC:1.2.1.16)
NADP-dependent succinate-semialdehyde dehydrogenase n=1 Tax=Herbaspirillum frisingense GSF30 RepID=R0FKS0_9BURK
NADP-dependent succinate-semialdehyde dehydrogenase {ECO:0000313|EMBL:EOA02483.1}; TaxID=864073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum frisingense GSF30.;"
2019_SCN_bioreactor_t2_biofilm_scaffold_14546_17
Herbaspirillum frisingense, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16748..18076
DNA (1329bp) protein (443aa)
Transporter n=1 Tax=Herbaspirillum frisingense GSF30 RepID=R0EAR6_9BURK
Transporter {ECO:0000313|EMBL:EOA02480.1}; TaxID=864073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum frisingense GSF30.;"
LysR family transcriptional regulator
2019_SCN_bioreactor_t2_biofilm_scaffold_14546_18
Herbaspirillum frisingense, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18076..19095
DNA (1020bp) protein (340aa)
Aminohydrolase n=1 Tax=Herbaspirillum frisingense GSF30 RepID=R0FXP6_9BURK
Aminohydrolase {ECO:0000313|EMBL:EOA02479.1}; TaxID=864073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum frisingense GSF30.;"
aminohydrolase
2019_SCN_bioreactor_t2_biofilm_scaffold_14546_19
Herbaspirillum frisingense, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19139..20113
DNA (975bp) protein (325aa)
Transcriptional regulator n=1 Tax=Herbaspirillum frisingense GSF30 RepID=R0FKR7_9BURK
Transcriptional regulator {ECO:0000313|EMBL:EOA02478.1}; TaxID=864073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum frisingense GSF30.;"
transcriptional regulator
2019_SCN_bioreactor_t2_biofilm_scaffold_14546_20
Herbaspirillum sp. YR522, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20116..21663)
DNA (1548bp) protein (516aa)
Methyl-accepting chemotaxis protein n=1 Tax=Herbaspirillum sp. YR522 RepID=J2W5A2_9BURK
Methyl-accepting chemotaxis protein {ECO:0000313|EMBL:EJN07755.1}; Flags: Precursor;; TaxID=1144342 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. YR522.;"
tar3; methyl-accepting chemotaxis protein
2019_SCN_bioreactor_t2_biofilm_scaffold_14546_21
Herbaspirillum sp. YR522, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21745..22464)
DNA (720bp) protein (240aa)
ABC-type branched-chain amino acid transport system, ATPase component n=1 Tax=Herbaspirillum sp. YR522 RepID=J3HW75_9BURK
ABC-type branched-chain amino acid transport system, ATPase component {ECO:0000313|EMBL:EJN07756.1}; TaxID=1144342 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. YR522.;"
branched-chain amino acid ABC transporter ATPase
2019_SCN_bioreactor_t2_biofilm_scaffold_14546_22
Herbaspirillum sp. YR522, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22461..23267)
DNA (807bp) protein (269aa)
ABC-type branched-chain amino acid transport system, ATPase component n=1 Tax=Herbaspirillum sp. YR522 RepID=J2VNP8_9BURK
ABC-type branched-chain amino acid transport system, ATPase component {ECO:0000313|EMBL:EJN07757.1}; TaxID=1144342 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. YR522.;"
amino acid ABC transporter ATP-binding protein
2019_SCN_bioreactor_t2_biofilm_scaffold_14546_23
Herbaspirillum sp. YR522, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23264..24151)
DNA (888bp) protein (296aa)
ABC-type branched-chain amino acid transport system, permease component n=1 Tax=Herbaspirillum sp. YR522 RepID=J3HWJ4_9BURK
ABC-type branched-chain amino acid transport system, permease component {ECO:0000313|EMBL:EJN07758.1}; Flags: Precursor;; TaxID=1144342 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. YR522.;"
putative branched-chain amino acid ABC transporter, permease protein
2019_SCN_bioreactor_t2_biofilm_scaffold_14546_24
Herbaspirillum sp. YR522, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24144..25037)
DNA (894bp) protein (298aa)
Branched-chain amino acid ABC-type transport system, permease component n=1 Tax=Herbaspirillum sp. YR522 RepID=J3CKM3_9BURK
Branched-chain amino acid ABC-type transport system, permease component {ECO:0000313|EMBL:EJN07759.1}; Flags: Precursor;; TaxID=1144342 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. YR522.;"
ABC transporter permease
2019_SCN_bioreactor_t2_biofilm_scaffold_14546_25
Herbaspirillum sp. YR522, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25140..26240)
DNA (1101bp) protein (367aa)
ABC-type branched-chain amino acid transport system, periplasmic component n=1 Tax=Herbaspirillum sp. YR522 RepID=J2W5A7_9BURK
ABC-type branched-chain amino acid transport system, periplasmic component {ECO:0000313|EMBL:EJN07760.1}; Flags: Precursor;; TaxID=1144342 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. YR522.;"
amino acid ABC transporter
2019_SCN_bioreactor_t2_biofilm_scaffold_14546_26
Herbaspirillum sp. YR522, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26361..27980)
DNA (1620bp) protein (540aa)
Delta-1-pyrroline-5-carboxylate dehydrogenase, group 1 n=1 Tax=Herbaspirillum sp. YR522 RepID=J3HW76_9BURK
Delta-1-pyrroline-5-carboxylate dehydrogenase, group 1 {ECO:0000313|EMBL:EJN07761.1}; TaxID=1144342 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. YR522.;"
hypothetical protein
2019_SCN_bioreactor_t2_biofilm_scaffold_14546_27
Herbaspirillum sp. YR522, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28201..28899
DNA (699bp) protein (233aa)
Transcriptional regulator n=1 Tax=Herbaspirillum sp. YR522 RepID=J2VNQ2_9BURK
Transcriptional regulator {ECO:0000313|EMBL:EJN07762.1}; TaxID=1144342 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. YR522.;"
GntR family transcriptional regulator
2019_SCN_bioreactor_t2_biofilm_scaffold_14546_28
Herbaspirillum frisingense, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28954..29844)
DNA (891bp) protein (297aa)
LysR family transcription regulator protein n=1 Tax=Herbaspirillum frisingense GSF30 RepID=R0G0M3_9BURK
LysR family transcription regulator protein {ECO:0000313|EMBL:EOA02477.1}; TaxID=864073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum frisingense GSF30.;"
LysR family transcription regulator protein
2019_SCN_bioreactor_t2_biofilm_scaffold_14546_29
Herbaspirillum frisingense, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29934..32024)
DNA (2091bp) protein (697aa)
Pyridoxamine 5'-phosphate oxidase-related FMN-binding protein n=1 Tax=Herbaspirillum frisingense GSF30 RepID=R0E9U7_9BURK
Pyridoxamine 5'-phosphate oxidase-related FMN-binding protein {ECO:0000313|EMBL:EOA02476.1}; TaxID=864073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum frisingense GSF30.;"
nitric oxide dioxygenase
2019_SCN_bioreactor_t2_biofilm_scaffold_14546_30
Herbaspirillum frisingense, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32084..32701)
DNA (618bp) protein (206aa)
gst; glutathione S-transferase (EC:2.5.1.18)
Glutathione S-transferase n=1 Tax=Herbaspirillum frisingense GSF30 RepID=R0EAR2_9BURK
Glutathione S-transferase {ECO:0000313|EMBL:EOA02475.1}; TaxID=864073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum frisingense GSF30.;"
Displaying items 1-30 of 89 in total

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