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2019_SCN_bioreactor_t2_biofilm_scaffold_51407

Search features with annotation key words

Displaying items 1-30 of 159 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t2_biofilm_scaffold_51407_1
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

comp(264..1049)
DNA (786bp) protein (262aa)
MtfD protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI000174532A
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK43115.1}; TaxID=330214 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
2019_SCN_bioreactor_t2_biofilm_scaffold_51407_2
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1117..2538)
DNA (1422bp) protein (474aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00035DB23C
Uncharacterized protein {ECO:0000313|EMBL:GAN75931.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
MmgE/PrpD family protein
2019_SCN_bioreactor_t2_biofilm_scaffold_51407_3
Granulibacter bethesdensis, Granulibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2669..3688
DNA (1020bp) protein (340aa)
Membrane-bound lytic murein transglycosylase B (EC:3.2.1.-)
Membrane-bound lytic murein transglycosylase B {ECO:0000313|EMBL:AHJ62884.1}; EC=3.2.1.- {ECO:0000313|EMBL:AHJ62884.1};; TaxID=1052004 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Granulibacter.;" source="Granulibacter bethesdensis CGDNIH3.;"
Membrane-bound lytic murein transglycosylase B n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BT84_GRABC
2019_SCN_bioreactor_t2_biofilm_scaffold_51407_4
Granulibacter bethesdensis, Granulibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3685..4608
DNA (924bp) protein (308aa)
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI0002F09276
Lipoprotein
Lipoprotein {ECO:0000313|EMBL:AHJ62885.1}; TaxID=1052004 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Granulibacter.;" source="Granulibacter bethesdensis CGDNIH3.;"
2019_SCN_bioreactor_t2_biofilm_scaffold_51407_5
Granulibacter bethesdensis, Granulibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4632..5879
DNA (1248bp) protein (416aa)
D-alanyl-D-alanine serine-type carboxypeptidase (EC:3.4.16.4)
D-alanyl-D-alanine serine-type carboxypeptidase {ECO:0000313|EMBL:AHJ62886.1}; EC=3.4.16.4 {ECO:0000313|EMBL:AHJ62886.1};; TaxID=1052004 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Granulibacter.;" source="Granulibacter bethesdensis CGDNIH3.;"
D-alanyl-D-alanine serine-type carboxypeptidase n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BT82_GRABC
2019_SCN_bioreactor_t2_biofilm_scaffold_51407_6
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5879..6511
DNA (633bp) protein (211aa)
Thymidylate kinase {ECO:0000256|HAMAP-Rule:MF_00165}; EC=2.7.4.9 {ECO:0000256|HAMAP-Rule:MF_00165};; dTMP kinase {ECO:0000256|HAMAP-Rule:MF_00165}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
tmk; thymidylate kinase (EC:2.7.4.9)
Thymidylate kinase n=2 Tax=Acidiphilium RepID=A5FX56_ACICJ
2019_SCN_bioreactor_t2_biofilm_scaffold_51407_7
Granulibacter bethesdensis, Granulibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6508..7518
DNA (1011bp) protein (337aa)
DNA polymerase III, delta' subunit (EC:2.7.7.7)
DNA polymerase III, delta' subunit {ECO:0000313|EMBL:AHJ62891.1}; EC=2.7.7.7 {ECO:0000313|EMBL:AHJ62891.1};; TaxID=1052004 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Granulibacter.;" source="Granulibacter bethesdensis CGDNIH3.;"
DNA polymerase III, delta' subunit n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BT78_GRABC
2019_SCN_bioreactor_t2_biofilm_scaffold_51407_8
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


7526..9061
DNA (1536bp) protein (512aa)
Methionine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01228, ECO:0000256|SAAS:SAAS00012840}; EC=6.1.1.10 {ECO:0000256|HAMAP-Rule:MF_01228, ECO:0000256|SAAS:SAAS00012840};; Methionyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01228}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
methionyl-tRNA synthetase (EC:6.1.1.10)
methionyl-tRNA synthetase n=1 Tax=Gluconacetobacter europaeus RepID=UPI000237ED48
2019_SCN_bioreactor_t2_biofilm_scaffold_51407_9
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9069..9842
DNA (774bp) protein (258aa)
Hydrolase, TatD family n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RQ52_9PROT
Deoxyribonuclease TatD {ECO:0000313|EMBL:GAN76939.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
putative deoxyribonuclease
2019_SCN_bioreactor_t2_biofilm_scaffold_51407_10
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9855..10646
DNA (792bp) protein (264aa)
Metal-dependent hydrolase (EC:3.-.-.-)
Metal-dependent hydrolase n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BT75_GRABC
Metal dependent hydrolase PhnP {ECO:0000313|EMBL:GAN76938.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
2019_SCN_bioreactor_t2_biofilm_scaffold_51407_11
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10856..11764
DNA (909bp) protein (303aa)
Putative acetamidase/formamidase n=1 Tax=Rhizobium sp. AP16 RepID=J2L927_9RHIZ
Putative acetamidase/formamidase {ECO:0000313|EMBL:EJK83951.1}; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
acetamidase/formamidase
2019_SCN_bioreactor_t2_biofilm_scaffold_51407_12
Vibrio shilonii, Vibrio, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11775..12587)
DNA (813bp) protein (271aa)
Uncharacterized protein n=1 Tax=Vibrio shilonii AK1 RepID=A6CXX8_9VIBR
Uncharacterized protein {ECO:0000313|EMBL:EDL54845.1}; TaxID=391591 species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.;" source="Vibrio shilonii AK1.;"
putative Nucleoside-diphosphate-sugar epimerase
2019_SCN_bioreactor_t2_biofilm_scaffold_51407_13
Pseudomonas oryzihabitans, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12738..13940)
DNA (1203bp) protein (401aa)
bifunctional D-altronate/D-mannonate dehydratase n=1 Tax=Pseudomonas sp. 313 RepID=UPI000308CE30
Bifunctional D-altronate/D-mannonate dehydratase {ECO:0000313|EMBL:KIZ49298.1}; TaxID=47885 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas oryzihabitans.;"
mandelate racemase/muconate lactonizing protein
2019_SCN_bioreactor_t2_biofilm_scaffold_51407_14
Azospirillum thiophilum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14016..14669)
DNA (654bp) protein (218aa)
Outer membrane lipoprotein n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AF45_AZOBR
Membrane protein {ECO:0000313|EMBL:KJR62954.1}; TaxID=528244 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum thiophilum.;"
membrane protein
2019_SCN_bioreactor_t2_biofilm_scaffold_51407_15
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14806..16659)
DNA (1854bp) protein (618aa)
Dihydroxy-acid dehydratase {ECO:0000255|HAMAP-Rule:MF_00012}; Short=DAD {ECO:0000255|HAMAP-Rule:MF_00012};; EC=4.2.1.9 {ECO:0000255|HAMAP-Rule:MF_00012};; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
dihydroxy-acid dehydratase n=1 Tax=Elioraea tepidiphila RepID=UPI000366E894
dihydroxy-acid dehydratase
2019_SCN_bioreactor_t2_biofilm_scaffold_51407_16
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16731..17330)
DNA (600bp) protein (200aa)
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI0002FDEBFB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGH50610.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
2019_SCN_bioreactor_t2_biofilm_scaffold_51407_17
Bradyrhizobium sp. S23321, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17360..17848
DNA (489bp) protein (163aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. S23321 RepID=I0G7W2_9BRAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL76849.1}; TaxID=335659 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. S23321.;"
2019_SCN_bioreactor_t2_biofilm_scaffold_51407_18
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17864..18814)
DNA (951bp) protein (317aa)
Metallophosphoesterase n=1 Tax=Bradyrhizobium sp. S23321 RepID=I0G7W1_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:BAR57914.1}; TaxID=1355477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens.;"
metallophosphoesterase
2019_SCN_bioreactor_t2_biofilm_scaffold_51407_19
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18965..19771
DNA (807bp) protein (269aa)
MazG family protein n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RQ50_9PROT
MazG family protein {ECO:0000313|EMBL:EFH10576.1}; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
MazG protein
2019_SCN_bioreactor_t2_biofilm_scaffold_51407_20
unknown

Not on your lists

comp(19779..20492)
DNA (714bp) protein (238aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI000380D523
2019_SCN_bioreactor_t2_biofilm_scaffold_51407_21
RLO_PLX_64_10, Bacteria

Not on your lists

comp(20586..21455)
DNA (870bp) protein (290aa)
hypothetical protein n=1 Tax=Paenibacillus daejeonensis RepID=UPI000381A152
putative dioxygenase
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
2019_SCN_bioreactor_t2_biofilm_scaffold_51407_22
Rubellimicrobium mesophilum, Rubellimicrobium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21481..22488)
DNA (1008bp) protein (336aa)
UPI0003D00784 related cluster n=1 Tax=unknown RepID=UPI0003D00784
Ribose ABC transporter, periplasmic binding protein {ECO:0000313|EMBL:EYD77220.1}; TaxID=442562 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rubellimicrobium.;" source="Rubellimicrobium mesophilum DSM 19309.;"
sugar ABC transporter
2019_SCN_bioreactor_t2_biofilm_scaffold_51407_23
Bradyrhizobium sp. WSM1253, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22512..23411)
DNA (900bp) protein (300aa)
Dihydrodipicolinate synthase/N-acetylneuraminate lyase n=1 Tax=Bradyrhizobium sp. WSM1253 RepID=I2QU54_9BRAD
Dihydrodipicolinate synthase/N-acetylneuraminate lyase {ECO:0000313|EMBL:EIG63310.1}; TaxID=319003 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM1253.;"
dihydrodipicolinate synthase
2019_SCN_bioreactor_t2_biofilm_scaffold_51407_24
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23584..24231
DNA (648bp) protein (216aa)
Uracil phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01218, ECO:0000256|SAAS:SAAS00084530}; EC=2.4.2.9 {ECO:0000256|HAMAP-Rule:MF_01218, ECO:0000256|SAAS:SAAS00084480};; UMP pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_01218}; UPRTase {ECO:0000256|HAMAP-Rule:MF_01218}; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
uracil phosphoribosyltransferase n=1 Tax=Roseomonas sp. B5 RepID=UPI0002D66F9F
upp; uracil phosphoribosyltransferase
2019_SCN_bioreactor_t2_biofilm_scaffold_51407_25
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24274..25971)
DNA (1698bp) protein (566aa)
gamma-glutamyltransferase n=1 Tax=Bradyrhizobium elkanii RepID=UPI000367E84E
Gamma-glutamyltransferase {ECO:0000313|EMBL:ETR75699.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
gamma-glutamyltransferase
2019_SCN_bioreactor_t2_biofilm_scaffold_51407_26
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26160..27749
DNA (1590bp) protein (530aa)
Tat pathway signal sequence domain protein n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A2G2_9PROT
Tat pathway signal sequence domain protein {ECO:0000313|EMBL:EHL99660.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
extracellular solute-binding protein
2019_SCN_bioreactor_t2_biofilm_scaffold_51407_27
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27789..28730)
DNA (942bp) protein (314aa)
Putative cytidine/uridine-specific hydrolase n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=G9ZXA2_9PROT
Putative cytidine/uridine-specific hydrolase {ECO:0000313|EMBL:EHM02351.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
hypothetical protein
2019_SCN_bioreactor_t2_biofilm_scaffold_51407_28
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28935..29330
DNA (396bp) protein (132aa)
Transposase n=1 Tax=Methylobacterium extorquens DSM 13060 RepID=H1KSH9_METEX
Transposase {ECO:0000313|EMBL:EHP87720.1}; TaxID=882800 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens DSM 13060.;"
IS298 transposase OrfA
2019_SCN_bioreactor_t2_biofilm_scaffold_51407_29
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29350..30117)
DNA (768bp) protein (256aa)
Oxidoreductase protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7D936_BRAJP
oxidoreductase protein
Oxidoreductase protein {ECO:0000313|EMBL:BAL10127.1}; TaxID=1037409 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum USDA 6.;"
2019_SCN_bioreactor_t2_biofilm_scaffold_51407_30
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30114..31223)
DNA (1110bp) protein (370aa)
ABC transporter ATP-binding protein n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89KQ9_BRADU
Putative ABC transporter ATP-binding protein y4oS {ECO:0000313|EMBL:KGJ70409.1}; TaxID=754504 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens SEMIA 5080.;"
ABC transporter ATP-binding protein
Displaying items 1-30 of 159 in total

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