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2019_SCN_bioreactor_t2_biofilm_scaffold_123040

Search features with annotation key words

Displaying items 1-30 of 355 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t2_biofilm_scaffold_123040_1
Pseudomonas alcaligenes, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..1524)
DNA (1524bp) protein (508aa)
hypothetical protein n=1 Tax=Methylobacterium sp. 77 RepID=UPI00037676AA
Uncharacterized protein {ECO:0000313|EMBL:EQM68713.1}; TaxID=1333854 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas alcaligenes OT 69.;"
hyalin repeat-containing protein
2019_SCN_bioreactor_t2_biofilm_scaffold_123040_2
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1590..2633)
DNA (1044bp) protein (348aa)
Transcriptional regulator, AraC family {ECO:0000313|EMBL:EFH09111.1}; EC=2.1.1.63 {ECO:0000313|EMBL:EFH09111.1};; Flags: Fragment;; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI000382ED7A
methylated-DNA--protein-cysteine methyltransferase
2019_SCN_bioreactor_t2_biofilm_scaffold_123040_3
Tanticharoenia sakaeratensis, Tanticharoenia, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2841..3404
DNA (564bp) protein (188aa)
hypothetical protein n=1 Tax=Gluconacetobacter oboediens RepID=UPI000237E19F
Uncharacterized protein {ECO:0000313|EMBL:GAN55534.1}; TaxID=1231623 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Tanticharoenia.;" source="Tanticharoenia sakaeratensis NBRC 103193.;"
hypothetical protein
2019_SCN_bioreactor_t2_biofilm_scaffold_123040_4
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3622..4611
DNA (990bp) protein (330aa)
OmpA family protein n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RS57_9PROT
OmpA family protein {ECO:0000313|EMBL:EFH09863.1}; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
Outer membrane protein A
2019_SCN_bioreactor_t2_biofilm_scaffold_123040_5
Endozoicomonas elysicola, Endozoicomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4820..5338
DNA (519bp) protein (173aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00037860AB
Acetyltransferase {ECO:0000313|EMBL:KEI70549.1}; TaxID=305900 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Hahellaceae; Endozoicomonas.;" source="Endozoicomonas elysicola.;"
N-acetyltransferase GCN5
2019_SCN_bioreactor_t2_biofilm_scaffold_123040_6
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5374..6129
DNA (756bp) protein (252aa)
prolyl 4-hydroxylase n=1 Tax=Variovorax paradoxus RepID=UPI000371F15F
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACS16772.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
2019_SCN_bioreactor_t2_biofilm_scaffold_123040_7
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6216..7670)
DNA (1455bp) protein (485aa)
Mannose-6-phosphate isomerase (EC:2.7.7.22 5.3.1.8)
Mannose-6-phosphate isomerase n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BV98_GRABC
Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase {ECO:0000313|EMBL:GAN77649.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
2019_SCN_bioreactor_t2_biofilm_scaffold_123040_8
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7818..9014
DNA (1197bp) protein (399aa)
hyppurate hydrolase n=1 Tax=Roseomonas sp. B5 RepID=UPI0002DB2686
Amidohydrolase/peptidase M20 {ECO:0000313|EMBL:GAN77650.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
hipO; hyppurate hydrolase
2019_SCN_bioreactor_t2_biofilm_scaffold_123040_9
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9122..9985
DNA (864bp) protein (288aa)
2-dehydropantoate 2-reductase {ECO:0000313|EMBL:EFH10081.1}; EC=1.1.1.- {ECO:0000313|EMBL:EFH10081.1};; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
2-dehydropantoate 2-reductase (EC:1.1.1.169)
2-dehydropantoate 2-reductase n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RRJ8_9PROT
2019_SCN_bioreactor_t2_biofilm_scaffold_123040_10
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10001..10939)
DNA (939bp) protein (313aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI000373E698
Uncharacterized protein {ECO:0000313|EMBL:EGO96462.1}; TaxID=1043206 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. PM.;"
hypothetical protein
2019_SCN_bioreactor_t2_biofilm_scaffold_123040_11
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11006..11215)
DNA (210bp) protein (70aa)
Uncharacterized protein n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RIX4_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EFH12744.1}; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
hypothetical protein
2019_SCN_bioreactor_t2_biofilm_scaffold_123040_12
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11281..12162
DNA (882bp) protein (294aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TZ79_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CCE11767.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
hypothetical protein
2019_SCN_bioreactor_t2_biofilm_scaffold_123040_13
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12326..12661
DNA (336bp) protein (112aa)
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI00036F2E6E
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EGO95485.1}; TaxID=1043206 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. PM.;"
2019_SCN_bioreactor_t2_biofilm_scaffold_123040_14
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12713..13570)
DNA (858bp) protein (286aa)
Uncharacterized protein n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7ILZ1_XANP2
Uncharacterized protein {ECO:0000313|EMBL:GAN77034.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
hypothetical protein
2019_SCN_bioreactor_t2_biofilm_scaffold_123040_15
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13835..14995)
DNA (1161bp) protein (387aa)
Tat pathway signal sequence domain protein n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RKS1_9PROT
Tat pathway signal sequence domain protein {ECO:0000313|EMBL:EFH12101.1}; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
ABC transporter ATP-binding protein
2019_SCN_bioreactor_t2_biofilm_scaffold_123040_16
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15164..16219)
DNA (1056bp) protein (352aa)
2-oxoglutarate ferredoxin oxidoreductase subunit beta n=1 Tax=Bradyrhizobium elkanii RepID=UPI000374210E
2-oxoglutarate ferredoxin oxidoreductase subunit beta {ECO:0000313|EMBL:KJC49665.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
2-oxoglutarate ferredoxin oxidoreductase subunit beta
2019_SCN_bioreactor_t2_biofilm_scaffold_123040_17
bacterium YEK0313, Bacteria

Not on your lists

comp(16216..18054)
DNA (1839bp) protein (613aa)
2-oxoglutarate synthase subunit A (EC:1.2.7.3)
ferredoxin oxidoreductase n=1 Tax=Bradyrhizobium elkanii RepID=UPI0003681D82
2-oxoglutarate oxidoreductase subunit KorA {ECO:0000313|EMBL:CEJ15201.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
2019_SCN_bioreactor_t2_biofilm_scaffold_123040_18
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18051..19847)
DNA (1797bp) protein (599aa)
Glutamate synthase (NADPH) small chain n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RBR2_PHEZH
Glutamate synthase {ECO:0000313|EMBL:ETR75540.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
glutamate synthase (NADPH) small chain
2019_SCN_bioreactor_t2_biofilm_scaffold_123040_19
Gluconacetobacter diazotrophicus, Gluconacetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20016..20882
DNA (867bp) protein (289aa)
Endonuclease/exonuclease/phosphatase n=1 Tax=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) RepID=A9HL79_GLUDA
endonuclease/exonuclease/phosphatase
Endonuclease/exonuclease/phosphatase {ECO:0000313|EMBL:ACI50205.1}; Putative endonuclease/exonuclease/phosphatase family {ECO:0000313|EMBL:CAP56132.1}; TaxID=272568 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Gluconacetobacter.;" source="Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 /; PAl5).;"
2019_SCN_bioreactor_t2_biofilm_scaffold_123040_20
Ralstonia sp. AU12-08, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20937..21692
DNA (756bp) protein (252aa)
Oxidoreductase n=1 Tax=Ralstonia sp. AU12-08 RepID=S9RYN1_9RALS
short-chain dehydrogenase/reductase SDR
Oxidoreductase {ECO:0000313|EMBL:EPX97348.1}; TaxID=1235457 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. AU12-08.;"
2019_SCN_bioreactor_t2_biofilm_scaffold_123040_21
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21718..22938
DNA (1221bp) protein (407aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI000377DBD3
hypothetical protein
Tax=RBG_16_Betaproteobacteria_66_20_curated
2019_SCN_bioreactor_t2_biofilm_scaffold_123040_22
uncultured Aquificae bacterium, Aquificae, Aquificae, Bacteria

Not on your lists

23043..24242
DNA (1200bp) protein (400aa)
Oxidoreductase molybdopterin binding protein n=1 Tax=uncultured Aquificae bacterium RepID=H5SDT9_9BACT
Oxidoreductase molybdopterin binding protein {ECO:0000313|EMBL:BAL54325.1}; TaxID=453415 species="Bacteria; Aquificae; environmental samples.;" source="uncultured Aquificae bacterium.;"
sorA; sulfite:cytochrome c oxidoreductase subunit A
2019_SCN_bioreactor_t2_biofilm_scaffold_123040_23

Not on your lists

24256..24543
DNA (288bp) protein (96aa)
Putative Sulfite:cytochrome c oxidoreductase subunit B SorB-like n=1 Tax=mine drainage metagenome RepID=E6PMK2_9ZZZZ
Putative Sulfite:cytochrome c oxidoreductase subunit B SorB-like {ECO:0000313|EMBL:CBH96154.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
sorB; sulfite:cytochrome c oxidoreductase subunit B
2019_SCN_bioreactor_t2_biofilm_scaffold_123040_24
Cyanobium sp. CACIAM 14, Cyanobium, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

24565..25455
DNA (891bp) protein (297aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00036D65A6
Uncharacterized protein {ECO:0000313|EMBL:KEF40801.1}; TaxID=1496688 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Cyanobium.;" source="Cyanobium sp. CACIAM 14.;"
hypothetical protein
2019_SCN_bioreactor_t2_biofilm_scaffold_123040_25
Hoeflea sp. BAL378, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25460..26431
DNA (972bp) protein (324aa)
hypothetical protein n=1 Tax=Amorphus coralli RepID=UPI00035ECDDB
Ornithine cyclodeaminase {ECO:0000313|EMBL:KGF70886.1}; TaxID=1547437 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BAL378.;"
ornithine cyclodeaminase/mu-crystallin family protein
2019_SCN_bioreactor_t2_biofilm_scaffold_123040_26
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

26428..27846
DNA (1419bp) protein (473aa)
Amidase family protein n=1 Tax=Myxococcus fulvus (strain ATCC BAA-855 / HW-1) RepID=F8CIP0_MYXFH
amidase family protein
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
2019_SCN_bioreactor_t2_biofilm_scaffold_123040_27
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27861..29450
DNA (1590bp) protein (530aa)
Oxidoreductase, GMC family protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8TMA1_9PROT
Oxidoreductase, GMC family protein {ECO:0000313|EMBL:EDP65705.1}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
glucose-methanol-choline oxidoreductase
2019_SCN_bioreactor_t2_biofilm_scaffold_123040_28
Komagataeibacter xylinus, Komagataeibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29549..29905)
DNA (357bp) protein (119aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI00037DC1AD
glyoxalase protein
Glyoxalase protein {ECO:0000313|EMBL:AHI26318.1}; TaxID=1296990 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Komagataeibacter.;" source="Komagataeibacter xylinus E25.;"
2019_SCN_bioreactor_t2_biofilm_scaffold_123040_29
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29961..30728
DNA (768bp) protein (256aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI0002EAC01B
Short-chain dehydrogenase {ECO:0000313|EMBL:ETR74903.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein
2019_SCN_bioreactor_t2_biofilm_scaffold_123040_30
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30771..31976)
DNA (1206bp) protein (402aa)
Putative ABC-type branched-chain amino acid transporter, periplasmic binding protein n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TQM5_9BRAD
ABC transporter branched-chain amino acid permease {ECO:0000313|EMBL:GAN76532.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
ilvK; high-affinity leucine-isoleucine-valine transport system periplasmic binding protein
Displaying items 1-30 of 355 in total

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