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2019_SCN_bioreactor_t2_biofilm_scaffold_29413

Search features with annotation key words

Displaying items 1-30 of 71 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t2_biofilm_scaffold_29413_1
Granulibacter bethesdensis, Granulibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..382)
DNA (381bp) protein (127aa)
Hypothetical secreted protein n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BT49_GRABC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHJ62932.1}; TaxID=1052004 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Granulibacter.;" source="Granulibacter bethesdensis CGDNIH3.;"
2019_SCN_bioreactor_t2_biofilm_scaffold_29413_2
Granulibacter bethesdensis, Granulibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(396..938)
DNA (543bp) protein (181aa)
TolR protein n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BT50_GRABC
TolR protein
TolR protein {ECO:0000313|EMBL:ABI62002.1}; TaxID=391165 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Granulibacter.;" source="Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1).;"
2019_SCN_bioreactor_t2_biofilm_scaffold_29413_3
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(940..1656)
DNA (717bp) protein (239aa)
TolQ protein n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BT51_GRABC
Proton channel/TonB-dependent biopolymer transporter MotA/TolQ/ExbB {ECO:0000313|EMBL:GAN76958.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
TolQ protein
2019_SCN_bioreactor_t2_biofilm_scaffold_29413_4
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1749..2201)
DNA (453bp) protein (151aa)
short-chain acyl-CoA hydrolase (EC:3.1.2.18)
Short-chain acyl-CoA hydrolase n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BT52_GRABC
4-hydroxybenzoyl-CoA thioesterase {ECO:0000313|EMBL:GAN76959.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
2019_SCN_bioreactor_t2_biofilm_scaffold_29413_5
Granulibacter bethesdensis, Granulibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2198..3262)
DNA (1065bp) protein (355aa)
Holliday junction ATP-dependent DNA helicase RuvB {ECO:0000255|HAMAP-Rule:MF_00016}; EC=3.6.4.12 {ECO:0000255|HAMAP-Rule:MF_00016};; TaxID=391165 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Granulibacter.;" source="Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1).;"
Holliday junction ATP-dependent DNA helicase RuvB n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=RUVB_GRABC
Holliday junction DNA helicase ruvB
2019_SCN_bioreactor_t2_biofilm_scaffold_29413_6
Granulibacter bethesdensis, Granulibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3259..3858)
DNA (600bp) protein (200aa)
Holliday junction ATP-dependent DNA helicase RuvA {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058935}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058896};; TaxID=1052004 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Granulibacter.;" source="Granulibacter bethesdensis CGDNIH3.;"
Holliday junction ATP-dependent DNA helicase RuvA n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BT55_GRABC
Holliday junction DNA helicase ruvA
2019_SCN_bioreactor_t2_biofilm_scaffold_29413_7
Granulibacter bethesdensis, Granulibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3855..4361)
DNA (507bp) protein (169aa)
Crossover junction endodeoxyribonuclease ruvC (EC:3.1.22.4)
Crossover junction endodeoxyribonuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106335}; EC=3.1.22.4 {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106388};; Holliday junction nuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; Holliday junction resolvase RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; TaxID=1052004 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Granulibacter.;" source="Granulibacter bethesdensis CGDNIH3.;"
Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=RUVC_GRABC
2019_SCN_bioreactor_t2_biofilm_scaffold_29413_8
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4371..5120)
DNA (750bp) protein (250aa)
Probable transcriptional regulatory protein Gdia_1219 n=2 Tax=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) RepID=B5ZH35_GLUDA
Probable transcriptional regulatory protein Asru_0431_03 {ECO:0000256|HAMAP-Rule:MF_00693}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
Putative cytosolic protein
2019_SCN_bioreactor_t2_biofilm_scaffold_29413_9
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5405..6220)
DNA (816bp) protein (272aa)
Putative uncharacterized protein n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BT58_GRABC
Uncharacterized protein {ECO:0000313|EMBL:GAN77727.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
Hypothetical protein
2019_SCN_bioreactor_t2_biofilm_scaffold_29413_10
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6235..6792)
DNA (558bp) protein (186aa)
5-formyltetrahydrofolate cyclo-ligase {ECO:0000256|RuleBase:RU361279}; EC=6.3.3.2 {ECO:0000256|RuleBase:RU361279};; TaxID=1043206 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. PM.;"
5-formyltetrahydrofolate cyclo-ligase n=3 Tax=Acidiphilium RepID=A5G1F3_ACICJ
5-formyltetrahydrofolate cyclo-ligase
2019_SCN_bioreactor_t2_biofilm_scaffold_29413_11
Acidocella aminolytica, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6958..7296)
DNA (339bp) protein (113aa)
Hypothetical cytosolic protein n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BT61_GRABC
Cell division protein ZapA {ECO:0000256|SAAS:SAAS00072473}; TaxID=1120923 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella aminolytica 101 = DSM 11237.;"
Putative cytosolic protein
2019_SCN_bioreactor_t2_biofilm_scaffold_29413_12
unknown

Not on your lists

comp(7327..7512)
DNA (186bp) protein (62aa)

This feature has no annotations

2019_SCN_bioreactor_t2_biofilm_scaffold_29413_13
Acidocella aminolytica, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7576..8025
DNA (450bp) protein (150aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI000364DAFF
Uncharacterized protein {ECO:0000313|EMBL:GAN80266.1}; TaxID=1120923 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella aminolytica 101 = DSM 11237.;"
hypothetical protein
2019_SCN_bioreactor_t2_biofilm_scaffold_29413_14
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8060..8980
DNA (921bp) protein (307aa)
fructose-bisphosphate aldolase (EC:4.1.2.13)
fructose-bisphosphate aldolase n=1 Tax=Elioraea tepidiphila RepID=UPI00035DF554
Fructose-bisphosphate aldolase {ECO:0000313|EMBL:GAN77221.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
2019_SCN_bioreactor_t2_biofilm_scaffold_29413_15
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8983..9669
DNA (687bp) protein (229aa)
Thiamine-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826}; EC=2.5.1.3 {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826};; Thiamine-phosphate pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826}; Thiamine-phosphate synthase; Short=TP synthase {ECO:0000256|HAMAP-Rule:MF_00097};; Short=TPS {ECO:0000256|HAMAP-Rule:MF_00097};; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
thiamine-phosphate synthase n=1 Tax=Roseomonas sp. B5 RepID=UPI0002F48B11
thiE1; thiamine-phosphate synthase
2019_SCN_bioreactor_t2_biofilm_scaffold_29413_16
R_Dadabacteria_53_21, Dadabacteria, Bacteria

Not on your lists

comp(9740..10354)
DNA (615bp) protein (205aa)
Putative exported protein n=1 Tax=Pseudomonas fluorescens (strain SBW25) RepID=C3KD03_PSEFS
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
2019_SCN_bioreactor_t2_biofilm_scaffold_29413_17
Acetobacter indonesiensis, Acetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10456..10842)
DNA (387bp) protein (129aa)
Uncharacterized protein n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RH51_9PROT
Uncharacterized protein {ECO:0000313|EMBL:GAN61786.1}; TaxID=1231340 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acetobacter.;" source="Acetobacter indonesiensis 5H-1.;"
hypothetical protein
2019_SCN_bioreactor_t2_biofilm_scaffold_29413_18
unknown

Not on your lists

comp(10842..11213)
DNA (372bp) protein (124aa)

This feature has no annotations

2019_SCN_bioreactor_t2_biofilm_scaffold_29413_19
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11255..12244)
DNA (990bp) protein (330aa)
lysine--tRNA ligase (EC:6.1.1.6)
Lysine--tRNA ligase n=3 Tax=Acidiphilium RepID=A5G137_ACICJ
Lysyl-tRNA synthetase {ECO:0000313|EMBL:GAN76537.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
2019_SCN_bioreactor_t2_biofilm_scaffold_29413_20
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(12241..13104)
DNA (864bp) protein (288aa)
Phenazine biosynthesis protein PhzF family n=1 Tax=Gloeocapsa sp. PCC 73106 RepID=L8LPN5_9CHRO
phenazine biosynthesis protein PhzF family
Phenazine biosynthesis protein PhzF family {ECO:0000313|EMBL:AHG89595.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
2019_SCN_bioreactor_t2_biofilm_scaffold_29413_21
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13371..13952)
DNA (582bp) protein (194aa)
Putative transporter n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11N84_MESSB
putative transporter
Putative transporter {ECO:0000313|EMBL:ABG61124.1}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
2019_SCN_bioreactor_t2_biofilm_scaffold_29413_22
Gluconacetobacter diazotrophicus, Gluconacetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13998..15113
DNA (1116bp) protein (372aa)
lysine 2,3-aminomutase YodO family protein (EC:5.4.3.2)
Lysine 2,3-aminomutase YodO family protein {ECO:0000313|EMBL:ACI51278.1}; EC=5.4.3.2 {ECO:0000313|EMBL:ACI51278.1};; Putative L-lysine 2,3-aminomutase {ECO:0000313|EMBL:CAP54451.1}; TaxID=272568 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Gluconacetobacter.;" source="Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 /; PAl5).;"
Lysine 2,3-aminomutase YodO family protein n=1 Tax=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) RepID=A9H6E4_GLUDA
2019_SCN_bioreactor_t2_biofilm_scaffold_29413_23
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15163..15729
DNA (567bp) protein (189aa)
Elongation factor P n=3 Tax=Acidiphilium RepID=EFP_ACICJ
Elongation factor P {ECO:0000256|HAMAP-Rule:MF_00141}; Short=EF-P {ECO:0000256|HAMAP-Rule:MF_00141};; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
elongation factor P
2019_SCN_bioreactor_t2_biofilm_scaffold_29413_24
Granulibacter bethesdensis, Granulibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15734..16579
DNA (846bp) protein (282aa)
myo-inositol-1(or 4)-monophosphatase (EC:3.1.3.25)
Myo-inositol-1(Or 4)-monophosphatase {ECO:0000313|EMBL:AHJ62900.1}; EC=3.1.3.25 {ECO:0000313|EMBL:AHJ62900.1};; TaxID=1052004 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Granulibacter.;" source="Granulibacter bethesdensis CGDNIH3.;"
Myo-inositol-1(Or 4)-monophosphatase n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BT70_GRABC
2019_SCN_bioreactor_t2_biofilm_scaffold_29413_25
Thalassospira permensis, Thalassospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16639..17391
DNA (753bp) protein (251aa)
Lysophospholipase n=1 Tax=Thalassospira xiamenensis M-5 = DSM 17429 RepID=K2LXC4_9PROT
Lysophospholipase {ECO:0000313|EMBL:KEO55067.1}; TaxID=1353532 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Thalassospira.;" source="Thalassospira permensis NBRC 106175.;"
lysophospholipase
2019_SCN_bioreactor_t2_biofilm_scaffold_29413_26
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17438..18613
DNA (1176bp) protein (392aa)
Uncharacterized protein n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A4S4_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EHL97948.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
MotA/TolQ/ExbB proton channel family protein
2019_SCN_bioreactor_t2_biofilm_scaffold_29413_27
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18634..20250
DNA (1617bp) protein (539aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI000368CD76
OmpA/MotB {ECO:0000313|EMBL:EDP63035.1}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
flagellar motor protein
2019_SCN_bioreactor_t2_biofilm_scaffold_29413_28
CG_Mariprof_02, Zetaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20357..22492
DNA (2136bp) protein (712aa)
hypothetical protein n=1 Tax=Thioalkalivibrio sp. AKL12 RepID=UPI000380C092
PAS/PAC sensor hybrid histidine kinase
Tax=CG_Mariprof_02
2019_SCN_bioreactor_t2_biofilm_scaffold_29413_29
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22502..23767)
DNA (1266bp) protein (422aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YIA0_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHH06281.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
hypothetical protein
2019_SCN_bioreactor_t2_biofilm_scaffold_29413_30
unknown

Not on your lists

comp(23773..23934)
DNA (162bp) protein (54aa)

This feature has no annotations

Displaying items 1-30 of 71 in total

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