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2019_SCN_bioreactor_t2_biofilm_scaffold_87618

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Displaying items 1-30 of 85 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t2_biofilm_scaffold_87618_1
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..110
DNA (108bp) protein (36aa)
hypothetical protein n=1 Tax=Rhizobium leguminosarum RepID=UPI000377535F
Uncharacterized protein {ECO:0000313|EMBL:CCV13987.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
IstB domain-containing protein ATP-binding protein
2019_SCN_bioreactor_t2_biofilm_scaffold_87618_2
Bradyrhizobium sp. DOA9, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

291..1241
DNA (951bp) protein (317aa)
hypothetical protein n=1 Tax=Methylosarcina fibrata RepID=UPI0003662482
Type II restriction enzyme, methylase subunits {ECO:0000313|EMBL:GAJ37541.1}; TaxID=1126627 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DOA9.;"
N-6 DNA methylase
2019_SCN_bioreactor_t2_biofilm_scaffold_87618_3
Candidatus Accumulibacter phosphatis, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1250..1441
DNA (192bp) protein (64aa)
N-6 DNA methylase n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RU60_ACCPU
N-6 DNA methylase
N-6 DNA methylase {ECO:0000313|EMBL:ACV36224.1}; TaxID=522306 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Accumulibacter phosphatis (strain UW-1).;"
2019_SCN_bioreactor_t2_biofilm_scaffold_87618_4
Salinisphaera shabanensis, Salinisphaera, Salinisphaerales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1438..2103
DNA (666bp) protein (222aa)
Uncharacterized protein n=1 Tax=Salinisphaera shabanensis E1L3A RepID=U2EQ26_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:ERJ19900.1}; TaxID=1033802 species="Bacteria; Proteobacteria; Gammaproteobacteria; Salinisphaerales; Salinisphaeraceae; Salinisphaera.;" source="Salinisphaera shabanensis E1L3A.;"
hypothetical protein
2019_SCN_bioreactor_t2_biofilm_scaffold_87618_5
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2575..3150)
DNA (576bp) protein (192aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU000493}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU000493};; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
Peptidyl-prolyl cis-trans isomerase (EC:5.2.1.8)
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BST7_GRABC
2019_SCN_bioreactor_t2_biofilm_scaffold_87618_6
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3174..3710)
DNA (537bp) protein (179aa)
Phosphopantetheine adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00151, ECO:0000256|SAAS:SAAS00109024}; EC=2.7.7.3 {ECO:0000256|HAMAP-Rule:MF_00151, ECO:0000256|SAAS:SAAS00109037};; Dephospho-CoA pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00151}; Pantetheine-phosphate adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00151}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
Phosphopantetheine adenylyltransferase (EC:2.7.7.3)
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI000301643E
2019_SCN_bioreactor_t2_biofilm_scaffold_87618_7
Granulibacter bethesdensis, Granulibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(3703..6474)
DNA (2772bp) protein (924aa)
DNA gyrase subunit A {ECO:0000255|HAMAP-Rule:MF_01897}; EC=5.99.1.3 {ECO:0000255|HAMAP-Rule:MF_01897};; TaxID=391165 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Granulibacter.;" source="Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1).;"
DNA gyrase subunit A (EC:5.99.1.3)
DNA gyrase subunit A n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=GYRA_GRABC
2019_SCN_bioreactor_t2_biofilm_scaffold_87618_8
Paracoccus halophilus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6760..7368)
DNA (609bp) protein (203aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI000362E50F
lysine exporter protein LysE/YggA
Membrane protein {ECO:0000313|EMBL:KGJ05030.1}; TaxID=376733 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus halophilus.;"
2019_SCN_bioreactor_t2_biofilm_scaffold_87618_9
Rhizobium sp. Pop5, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7461..8012)
DNA (552bp) protein (184aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. Pop5 RepID=K0W4N0_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EJZ18644.1}; TaxID=1223565 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. Pop5.;"
hypothetical protein
2019_SCN_bioreactor_t2_biofilm_scaffold_87618_10
Collimonas fungivorans, Collimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8101..9216)
DNA (1116bp) protein (372aa)
acyltransferase (EC:2.3.1.-)
Acyltransferases-like protein {ECO:0000313|EMBL:AEK60444.1}; EC=2.3.1.- {ECO:0000313|EMBL:AEK60444.1};; TaxID=1005048 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Collimonas.;" source="Collimonas fungivorans (strain Ter331).;"
Acyltransferases-like protein n=1 Tax=Collimonas fungivorans (strain Ter331) RepID=G0A8D2_COLFT
2019_SCN_bioreactor_t2_biofilm_scaffold_87618_11
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9223..10677)
DNA (1455bp) protein (485aa)
N-acyl-D-amino-acid deacylase n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A4M3_9PROT
N-acyl-D-amino-acid deacylase {ECO:0000313|EMBL:EHL98109.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
D-aminoacylase
2019_SCN_bioreactor_t2_biofilm_scaffold_87618_12
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10674..12410)
DNA (1737bp) protein (579aa)
Hydantoinase B/oxoprolinase {ECO:0000313|EMBL:EFH09552.1}; EC=3.5.2.9 {ECO:0000313|EMBL:EFH09552.1};; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
Hydantoin utilization protein B (EC:3.5.2.9)
Hydantoinase B/oxoprolinase n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RT10_9PROT
2019_SCN_bioreactor_t2_biofilm_scaffold_87618_13
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12532..14610)
DNA (2079bp) protein (693aa)
Hydantoinase/oxoprolinase {ECO:0000313|EMBL:EFH09553.1}; EC=3.5.2.9 {ECO:0000313|EMBL:EFH09553.1};; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI000371DC1F
hydantoin utilization protein
2019_SCN_bioreactor_t2_biofilm_scaffold_87618_14
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14905..15867
DNA (963bp) protein (321aa)
Putative glyoxylate reductase n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A0N0_9PROT
Putative glyoxylate reductase {ECO:0000313|EMBL:EHM00924.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
dihydrofolate reductase
2019_SCN_bioreactor_t2_biofilm_scaffold_87618_15
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16041..17003
DNA (963bp) protein (321aa)
4-phosphoerythronate dehydrogenase {ECO:0000313|EMBL:EFH10235.1}; EC=1.1.1.290 {ECO:0000313|EMBL:EFH10235.1};; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
4-phosphoerythronate dehydrogenase n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RR32_9PROT
2-oxo/hydroxy acid reductase
2019_SCN_bioreactor_t2_biofilm_scaffold_87618_16
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17063..18232)
DNA (1170bp) protein (390aa)
Aspartate aminotransferase n=1 Tax=Roseobacter sp. GAI101 RepID=B7RK59_9RHOB
Aspartate aminotransferase {ECO:0000313|EMBL:KGM35342.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
class I and II aminotransferase
2019_SCN_bioreactor_t2_biofilm_scaffold_87618_17
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18445..20769)
DNA (2325bp) protein (775aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI000376FCC1
Uncharacterized protein {ECO:0000313|EMBL:EHM02526.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
methyl-accepting chemotaxis protein
2019_SCN_bioreactor_t2_biofilm_scaffold_87618_18
Rhodospirillaceae bacterium BRH_c57, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20949..22340)
DNA (1392bp) protein (464aa)
hypothetical protein n=1 Tax=Novispirillum itersonii RepID=UPI000372C5C8
Uncharacterized protein {ECO:0000313|EMBL:KJS45747.1}; TaxID=1629718 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae.;" source="Rhodospirillaceae bacterium BRH_c57.;"
hypothetical protein
2019_SCN_bioreactor_t2_biofilm_scaffold_87618_19
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22458..23090
DNA (633bp) protein (211aa)
Conserved protein/domain typically associated with flavoprotein oxygenase DIM6/NTAB family-like protein n=3 Tax=Acidiphilium RepID=A5G1U0_ACICJ
Uncharacterized protein {ECO:0000313|EMBL:GAN76906.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
hypothetical protein
2019_SCN_bioreactor_t2_biofilm_scaffold_87618_20
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23102..24355
DNA (1254bp) protein (418aa)
Arabinose efflux permease family protein n=1 Tax=Caulobacter sp. AP07 RepID=J3AT98_9CAUL
Arabinose efflux permease family protein {ECO:0000313|EMBL:EJL37436.1}; Flags: Precursor;; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
putative major facilitator superfamily (MFS-1) transporter
2019_SCN_bioreactor_t2_biofilm_scaffold_87618_21
R_Betaproteobacteria_66_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24409..25191)
DNA (783bp) protein (261aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI000371E85A
hpcH/HpaI aldolase/citrate lyase family protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_66_14_curated
2019_SCN_bioreactor_t2_biofilm_scaffold_87618_22
Bordetella sp. 8-296-03, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25241..26056)
DNA (816bp) protein (272aa)
FkbM family methyltransferase n=1 Tax=Cycloclasticus sp. PY97M RepID=S2UEN6_9GAMM
Methyltransferase FkbM domain protein {ECO:0000313|EMBL:KCB35341.1}; TaxID=1331258 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella hinzii 8-296-03.;"
FkbM family methyltransferase
2019_SCN_bioreactor_t2_biofilm_scaffold_87618_23
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26390..27094
DNA (705bp) protein (235aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0002E84B28
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHX13749.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
2019_SCN_bioreactor_t2_biofilm_scaffold_87618_24
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27273..28847)
DNA (1575bp) protein (525aa)
putative DNA ligase (EC:6.5.1.-)
Putative DNA ligase n=1 Tax=Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / AIU301) RepID=F0IYZ3_ACIMA
DNA ligase {ECO:0000313|EMBL:GAN78174.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
2019_SCN_bioreactor_t2_biofilm_scaffold_87618_25
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28844..29863)
DNA (1020bp) protein (340aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00037B5E0A
mRNA 3'-end processing factor {ECO:0000313|EMBL:GAN78175.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
MRNA 3'-end processing factor
2019_SCN_bioreactor_t2_biofilm_scaffold_87618_26
Bradyrhizobium sp. ORS 375, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30029..30649
DNA (621bp) protein (207aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. ORS 375 RepID=H0SH01_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CCD93478.1}; TaxID=566679 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. ORS 375.;"
lysine exporter protein LysE/YggA
2019_SCN_bioreactor_t2_biofilm_scaffold_87618_27
Granulibacter bethesdensis, Granulibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30691..33222
DNA (2532bp) protein (844aa)
ATP-dependent helicase n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BTQ2_GRABC
ATP-dependent helicase
ATP-dependent helicase {ECO:0000313|EMBL:ABI61801.1}; TaxID=391165 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Granulibacter.;" source="Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1).;"
2019_SCN_bioreactor_t2_biofilm_scaffold_87618_28
Tanticharoenia sakaeratensis, Tanticharoenia, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33219..33938
DNA (720bp) protein (240aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00035C45B6
Metallophosphoesterase {ECO:0000313|EMBL:GAN53799.1}; TaxID=1231623 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Tanticharoenia.;" source="Tanticharoenia sakaeratensis NBRC 103193.;"
hypothetical protein
2019_SCN_bioreactor_t2_biofilm_scaffold_87618_29
Acidiphilium multivorum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33977..35431
DNA (1455bp) protein (485aa)
phr; deoxyribodipyrimidine photo-lyase (EC:4.1.99.3)
Deoxyribodipyrimidine photo-lyase {ECO:0000313|EMBL:BAJ81007.1}; EC=4.1.99.3 {ECO:0000313|EMBL:BAJ81007.1};; TaxID=926570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / NBRC 100883 /; AIU301).;"
Deoxyribodipyrimidine photo-lyase n=2 Tax=Acidiphilium RepID=F0IYZ7_ACIMA
2019_SCN_bioreactor_t2_biofilm_scaffold_87618_30
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35456..36253
DNA (798bp) protein (266aa)
Phosphoesterase n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BTQ4_GRABC
Phosphatase {ECO:0000313|EMBL:GAN78419.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
Phosphoesterase
Displaying items 1-30 of 85 in total

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