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2019_SCN_bioreactor_t2_biofilm_scaffold_128622

Search features with annotation key words

Displaying items 1-30 of 61 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t2_biofilm_scaffold_128622_1
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..136)
DNA (135bp) protein (45aa)
Transposase (Class IV) n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3X2B8_9BRAD
Transposase (Class IV) {ECO:0000313|EMBL:EAQ33621.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
transposase
2019_SCN_bioreactor_t2_biofilm_scaffold_128622_2
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(385..597)
DNA (213bp) protein (71aa)
PhnA protein n=1 Tax=Methylobacterium sp. 88A RepID=UPI00036F731D
putative PhnA protein
Tax=RBG_16_Betaproteobacteria_58_11_curated
2019_SCN_bioreactor_t2_biofilm_scaffold_128622_3
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(681..2804)
DNA (2124bp) protein (708aa)
Elongation factor G n=3 Tax=Acidiphilium RepID=EFG_ACICJ
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
elongation factor G
2019_SCN_bioreactor_t2_biofilm_scaffold_128622_4
Tanticharoenia sakaeratensis, Tanticharoenia, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3045..4346
DNA (1302bp) protein (434aa)
Uncharacterized protein-like protein n=1 Tax=Acidiphilium cryptum (strain JF-5) RepID=A5G101_ACICJ
Uncharacterized protein {ECO:0000313|EMBL:GAN52774.1}; TaxID=1231623 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Tanticharoenia.;" source="Tanticharoenia sakaeratensis NBRC 103193.;"
hypothetical protein
2019_SCN_bioreactor_t2_biofilm_scaffold_128622_5
Acidomonas methanolica, Acidomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4349..5623
DNA (1275bp) protein (425aa)
Uncharacterized protein n=1 Tax=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) RepID=B5ZG79_GLUDA
Uncharacterized protein {ECO:0000313|EMBL:GAJ28693.1}; TaxID=1231351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidomonas.;" source="Acidomonas methanolica NBRC 104435.;"
hypothetical protein
2019_SCN_bioreactor_t2_biofilm_scaffold_128622_6
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5671..6696)
DNA (1026bp) protein (342aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI00037F3880
siaP; TRAP dicarboxylate transporter-DctP subunit
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
2019_SCN_bioreactor_t2_biofilm_scaffold_128622_7
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6807..8078
DNA (1272bp) protein (424aa)
Amidase, hydantoinase/carbamoylase family {ECO:0000313|EMBL:EFH12705.1}; EC=3.5.-.- {ECO:0000313|EMBL:EFH12705.1};; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
Amidase, hydantoinase/carbamoylase family n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RJ11_9PROT
amidase, hydantoinase/carbamoylase family protein
2019_SCN_bioreactor_t2_biofilm_scaffold_128622_8
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8208..9053
DNA (846bp) protein (282aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI000370F346
Monoxide dehydrogenase {ECO:0000313|EMBL:EKE74781.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
FAD-binding molybdopterin dehydrogenase
2019_SCN_bioreactor_t2_biofilm_scaffold_128622_9
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9065..11758
DNA (2694bp) protein (898aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI000366C6F9
Aldehyde oxidase/xanthine dehydrogenase {ECO:0000313|EMBL:EKE74780.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
aldehyde oxidase/xanthine dehydrogenase
2019_SCN_bioreactor_t2_biofilm_scaffold_128622_10
R_Betaproteobacteria_68_150, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11755..13179
DNA (1425bp) protein (475aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00035CC998
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_68_150_curated
2019_SCN_bioreactor_t2_biofilm_scaffold_128622_11
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13319..14182
DNA (864bp) protein (288aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00037B2F4E
Uncharacterized protein {ECO:0000313|EMBL:EKE74778.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
hypothetical protein
2019_SCN_bioreactor_t2_biofilm_scaffold_128622_12
Magnetospirillum magneticum, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14179..14754
DNA (576bp) protein (192aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI0003740D07
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAE50283.1}; TaxID=342108 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum magneticum (strain AMB-1 / ATCC 700264).;"
2019_SCN_bioreactor_t2_biofilm_scaffold_128622_13
Bradyrhizobium sp. WSM1253, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14774..16003
DNA (1230bp) protein (410aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00037A4E2B
ABC transporter substrate-binding protein
ABC-type branched-chain amino acid transport system, periplasmic component {ECO:0000313|EMBL:EIG58751.1}; Flags: Precursor;; TaxID=319003 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM1253.;"
2019_SCN_bioreactor_t2_biofilm_scaffold_128622_14
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16010..17848
DNA (1839bp) protein (613aa)
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI0002EDD40E
ABC transporter permease {ECO:0000313|EMBL:KJB92228.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
ABC transporter permease
2019_SCN_bioreactor_t2_biofilm_scaffold_128622_15
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17845..18603
DNA (759bp) protein (253aa)
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI0002F24B80
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EHL97401.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
livG; branched-chain amino acid ABC transporter ATPase
2019_SCN_bioreactor_t2_biofilm_scaffold_128622_16
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18603..19304
DNA (702bp) protein (234aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI0003828866
ABC transporter {ECO:0000313|EMBL:EKE74773.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
ABC transporter
2019_SCN_bioreactor_t2_biofilm_scaffold_128622_17
unknown

Not on your lists

19393..19653
DNA (261bp) protein (87aa)

This feature has no annotations

2019_SCN_bioreactor_t2_biofilm_scaffold_128622_18
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19885..21144
DNA (1260bp) protein (420aa)
Major facilitator superfamily MFS_1 n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5WYQ4_THIK1
major facilitator superfamily protein
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ADG32231.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
2019_SCN_bioreactor_t2_biofilm_scaffold_128622_19
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21151..21543)
DNA (393bp) protein (131aa)
Rhodanese domain protein n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8T8Y0_MESCW
Rhodanese domain protein {ECO:0000313|EMBL:CDX17870.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
rhodanese domain-containing protein
2019_SCN_bioreactor_t2_biofilm_scaffold_128622_20
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21573..22256)
DNA (684bp) protein (228aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI000366A41E
Acetyltransferase, GNAT family {ECO:0000313|EMBL:EHL96084.1}; Flags: Fragment;; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
acetyltransferase family protein
2019_SCN_bioreactor_t2_biofilm_scaffold_128622_21
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22398..22820
DNA (423bp) protein (141aa)
hypothetical protein n=1 Tax=Bradyrhizobium japonicum RepID=UPI00036F1D64
CHRD
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
2019_SCN_bioreactor_t2_biofilm_scaffold_128622_22
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22947..24140)
DNA (1194bp) protein (398aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00038153AC
Enamidase {ECO:0000313|EMBL:KGM34887.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
metal-dependent hydrolase
2019_SCN_bioreactor_t2_biofilm_scaffold_128622_23
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24274..27726)
DNA (3453bp) protein (1151aa)
Uncharacterized protein n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IUF2_RHOCS
Uncharacterized protein {ECO:0000313|EMBL:GAN77201.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
hypothetical protein
2019_SCN_bioreactor_t2_biofilm_scaffold_128622_24
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27762..28241)
DNA (480bp) protein (160aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI000375529E
MarR family transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:EKE77276.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
2019_SCN_bioreactor_t2_biofilm_scaffold_128622_25
unknown

Not on your lists

comp(28356..28655)
DNA (300bp) protein (100aa)

This feature has no annotations

2019_SCN_bioreactor_t2_biofilm_scaffold_128622_26
Burkholderia cenocepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28902..30614
DNA (1713bp) protein (571aa)
major facilitator transporter n=1 Tax=Burkholderia sp. JPY347 RepID=UPI000363FBFD
major facilitator transporter
General substrate transporter:Major facilitator superfamily {ECO:0000313|EMBL:EAY63800.1}; TaxID=350702 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia cenocepacia PC184.;"
2019_SCN_bioreactor_t2_biofilm_scaffold_128622_27
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30813..32711
DNA (1899bp) protein (633aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00036A5758
Acetyl-CoA synthetase {ECO:0000313|EMBL:GAN77206.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
AMP-dependent synthetase and ligase
2019_SCN_bioreactor_t2_biofilm_scaffold_128622_28
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32741..34297)
DNA (1557bp) protein (519aa)
D-aminopeptidase (EC:3.4.11.19)
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI0003664BC3
Aminopeptidase {ECO:0000313|EMBL:KGM35215.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
2019_SCN_bioreactor_t2_biofilm_scaffold_128622_29
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34344..34889)
DNA (546bp) protein (182aa)
Molybdenum cofactor biosynthesis protein B n=2 Tax=Acidiphilium RepID=A5G2B4_ACICJ
Molybdenum cofactor biosynthesis protein B {ECO:0000256|PIRNR:PIRNR006443}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
molybdenum cofactor biosynthesis protein B
2019_SCN_bioreactor_t2_biofilm_scaffold_128622_30
Granulibacter bethesdensis, Granulibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34903..36807)
DNA (1905bp) protein (635aa)
Soluble lytic murein transglycosylase (EC:3.2.1.-)
Soluble lytic murein transglycosylase {ECO:0000313|EMBL:AHJ63729.1}; EC=3.2.1.- {ECO:0000313|EMBL:AHJ63729.1};; TaxID=1052004 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Granulibacter.;" source="Granulibacter bethesdensis CGDNIH3.;"
Soluble lytic murein transglycosylase n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BR03_GRABC
Displaying items 1-30 of 61 in total

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