ggKbase home page

2019_SCN_bioreactor_t2_biofilm_scaffold_49440

Search features with annotation key words

Displaying items 1-30 of 495 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t2_biofilm_scaffold_49440_1
unknown

Not on your lists

159..851
DNA (693bp) protein (231aa)

This feature has no annotations

2019_SCN_bioreactor_t2_biofilm_scaffold_49440_2
Geobacter sp. OR-1, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1009..1353
DNA (345bp) protein (115aa)
cupin n=1 Tax=Thiobacillus thioparus RepID=UPI0003630BEF
Cupin domain protein {ECO:0000313|EMBL:GAM10196.1}; TaxID=1266765 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. OR-1.;"
hypothetical protein
2019_SCN_bioreactor_t2_biofilm_scaffold_49440_3
Candidatus Accumulibacter sp. BA-91, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1531..2121
DNA (591bp) protein (197aa)
hypothetical protein n=1 Tax=Methylomonas sp. MK1 RepID=UPI00037BFDCB
Uncharacterized protein {ECO:0000313|EMBL:KFB72524.1}; TaxID=1454002 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-91.;"
hypothetical protein
2019_SCN_bioreactor_t2_biofilm_scaffold_49440_4
Lysobacter concretionis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2273..2749)
DNA (477bp) protein (159aa)
Uncharacterized protein n=2 Tax=Xanthomonas campestris pv. translucens RepID=K8Z6X2_XANCT
Membrane protein {ECO:0000313|EMBL:KGM51290.1}; TaxID=1122185 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter concretionis Ko07 = DSM 16239.;"
hypothetical protein
2019_SCN_bioreactor_t2_biofilm_scaffold_49440_5
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2781..5111)
DNA (2331bp) protein (777aa)
Peptidase S9B dipeptidylpeptidase IV domain protein n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WWS8_PSEUU
Peptidase S9B dipeptidylpeptidase IV domain protein {ECO:0000313|EMBL:ADV28627.1}; Flags: Precursor;; TaxID=743721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis (strain 11-1).;"
peptidase S9B dipeptidylpeptidase IV domain-containing protein
2019_SCN_bioreactor_t2_biofilm_scaffold_49440_6
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5252..5521
DNA (270bp) protein (90aa)
YcgL domain-containing protein DSC_00375 n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7US59_PSEUP
hypothetical protein
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
2019_SCN_bioreactor_t2_biofilm_scaffold_49440_7
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5514..8846
DNA (3333bp) protein (1111aa)
ankyrin n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI000310A868
ankyrin
Ankyrin {ECO:0000313|EMBL:ADV28608.1}; TaxID=743721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis (strain 11-1).;"
2019_SCN_bioreactor_t2_biofilm_scaffold_49440_8
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8892..10730)
DNA (1839bp) protein (613aa)
Glutathione-regulated potassium-efflux system protein n=1 Tax=Xanthomonas axonopodis pv. citrumelo F1 RepID=G2LXT8_9XANT
kefC; glutathione-regulated potassium-efflux system protein
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
2019_SCN_bioreactor_t2_biofilm_scaffold_49440_9
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10772..11419)
DNA (648bp) protein (216aa)
Uncharacterized protein n=1 Tax=Stenotrophomonas maltophilia MF89 RepID=T5KD16_STEMA
DUF4142 domain containing protein {ECO:0000313|EMBL:KGQ18041.1}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
2019_SCN_bioreactor_t2_biofilm_scaffold_49440_10
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11422..12099)
DNA (678bp) protein (226aa)
Putative uncharacterized protein n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) PF9_PSEUP">RepID=G7UPF9_PSEUP
Uncharacterized protein {ECO:0000313|EMBL:KGQ18040.1}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
hypothetical protein
2019_SCN_bioreactor_t2_biofilm_scaffold_49440_11
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

comp(12164..12502)
DNA (339bp) protein (113aa)
Uncharacterized protein n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C5K0_SPHTD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACZ37516.1}; TaxID=479434 species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Sphaerobacter.;" source="Sphaerobacter thermophilus (strain DSM 20745 / S 6022).;"
2019_SCN_bioreactor_t2_biofilm_scaffold_49440_12
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12540..15107)
DNA (2568bp) protein (856aa)
DNA topoisomerase 1 {ECO:0000256|HAMAP-Rule:MF_00952}; EC=5.99.1.2 {ECO:0000256|HAMAP-Rule:MF_00952};; DNA topoisomerase I {ECO:0000256|HAMAP-Rule:MF_00952}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
DNA topoisomerase I (EC:5.99.1.2)
DNA topoisomerase I n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI0002F79CA2
2019_SCN_bioreactor_t2_biofilm_scaffold_49440_13
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15266..15754)
DNA (489bp) protein (163aa)
Protein Smg homolog n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WPB8_PSEUU
Protein Smg homolog {ECO:0000256|HAMAP-Rule:MF_00598}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
hypothetical protein
2019_SCN_bioreactor_t2_biofilm_scaffold_49440_14
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15806..16960)
DNA (1155bp) protein (385aa)
DNA processing chain A n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UPG7_PSEUP
DNA processing protein DprA {ECO:0000313|EMBL:EYR68692.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
DNA processing protein DprA
2019_SCN_bioreactor_t2_biofilm_scaffold_49440_15
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17038..18234)
DNA (1197bp) protein (399aa)
peptidoglycan-binding protein LysM n=1 Tax=Xanthomonas oryzae RepID=UPI00037B1646
Peptidoglycan-binding protein LysM {ECO:0000313|EMBL:EYR68693.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
hypothetical protein
2019_SCN_bioreactor_t2_biofilm_scaffold_49440_16
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18391..18903
DNA (513bp) protein (171aa)
Peptide deformylase n=1 Tax=Xanthomonas translucens pv. graminis ART-Xtg29 RepID=K8Z2I6_XANCT
peptide deformylase
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
2019_SCN_bioreactor_t2_biofilm_scaffold_49440_17
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18908..19825
DNA (918bp) protein (306aa)
Methionyl-tRNA formyltransferase {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00043680}; EC=2.1.2.9 {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00150580};; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
Methionyl-tRNA formyltransferase n=1 Tax=Xanthomonas translucens pv. graminis ART-Xtg29 RepID=K8Z2P0_XANCT
methionyl-tRNA formyltransferase
2019_SCN_bioreactor_t2_biofilm_scaffold_49440_18
Lysobacter defluvii, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19822..21105
DNA (1284bp) protein (428aa)
Ribosomal RNA small subunit methyltransferase B {ECO:0000256|SAAS:SAAS00013752}; EC=2.1.1.- {ECO:0000256|SAAS:SAAS00274011};; TaxID=1385515 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter defluvii IMMIB APB-9 = DSM 18482.;"
Sun protein n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WPC3_PSEUU
sun protein
2019_SCN_bioreactor_t2_biofilm_scaffold_49440_19
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21130..22848
DNA (1719bp) protein (573aa)
Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase {ECO:0000313|EMBL:CCP18537.1}; EC=2.-.-.- {ECO:0000313|EMBL:CCP18537.1};; TaxID=1118157 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia RA8.;"
Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase n=1 Tax=Stenotrophomonas maltophilia RA8 RepID=M5D4R7_STEMA
glycosyl transferase family protein
2019_SCN_bioreactor_t2_biofilm_scaffold_49440_20
Burkholderia phytofirmans, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22845..23984
DNA (1140bp) protein (380aa)
UDP-galactopyranose mutase (EC:5.4.99.9)
UDP-galactopyranose mutase {ECO:0000313|EMBL:ACD15273.1}; EC=5.4.99.9 {ECO:0000313|EMBL:ACD15273.1};; TaxID=398527 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia phytofirmans (strain DSM 17436 / PsJN).;"
UDP-galactopyranose mutase n=1 Tax=Burkholderia phytofirmans (strain DSM 17436 / PsJN) RepID=B2T0G8_BURPP
2019_SCN_bioreactor_t2_biofilm_scaffold_49440_21
Shewanella putrefaciens, Shewanella, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23981..24808
DNA (828bp) protein (276aa)
hypothetical protein n=1 Tax=Caldimonas manganoxidans RepID=UPI00037C08E4
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABP77601.1}; TaxID=319224 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella.;" source="Shewanella putrefaciens (strain CN-32 / ATCC BAA-453).;"
2019_SCN_bioreactor_t2_biofilm_scaffold_49440_22
Rhizobium sp. Pop5, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24805..25617
DNA (813bp) protein (271aa)
hypothetical protein n=1 Tax=Empedobacter brevis RepID=UPI00036DB891
glycosyl transferase family protein
Glycosyltransferase {ECO:0000313|EMBL:EJZ16713.1}; Flags: Fragment;; TaxID=1223565 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. Pop5.;"
2019_SCN_bioreactor_t2_biofilm_scaffold_49440_23
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25614..26759
DNA (1146bp) protein (382aa)
Group 1 glycosyl transferase n=1 Tax=Alishewanella aestuarii B11 RepID=J2II06_9ALTE
Glycosyl transferase, group 1 {ECO:0000313|EMBL:KGQ18029.1}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
group 1 glycosyl transferase
2019_SCN_bioreactor_t2_biofilm_scaffold_49440_24
Lysobacter sp. A03, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26782..27771)
DNA (990bp) protein (330aa)
NODE_1, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ97624.1}; EC=5.1.3.2 {ECO:0000313|EMBL:KIQ97624.1};; TaxID=1199154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter sp. A03.;"
Putative uncharacterized protein n=1 Tax=uncultured bacterium RepID=C6G4C8_9BACT
NAD-dependent epimerase/dehydratase
2019_SCN_bioreactor_t2_biofilm_scaffold_49440_25
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27800..28729)
DNA (930bp) protein (310aa)
Lipid A biosynthesis acyltransferase n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WX11_PSEUU
Lipid A biosynthesis lauroyl acyltransferase {ECO:0000313|EMBL:AKC86868.1}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
lipid A biosynthesis acyltransferase
2019_SCN_bioreactor_t2_biofilm_scaffold_49440_26
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28758..29198
DNA (441bp) protein (147aa)
D-aminoacyl-tRNA deacylase {ECO:0000256|HAMAP-Rule:MF_00518}; EC=3.1.1.96 {ECO:0000256|HAMAP-Rule:MF_00518};; TaxID=1451188 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia M30.;"
D-tyrosyl-tRNA(Tyr) deacylase n=1 Tax=Stenotrophomonas maltophilia D457 RepID=I0KT85_STEMA
dtd; D-tyrosyl-tRNA(Tyr) deacylase
2019_SCN_bioreactor_t2_biofilm_scaffold_49440_27
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29291..31153
DNA (1863bp) protein (621aa)
RNA polymerase sigma factor RpoD n=3 Tax=Xanthomonas albilineans RepID=D2UG12_XANAP
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
rpoD; RNA polymerase sigma-70 factor, rpod protein
2019_SCN_bioreactor_t2_biofilm_scaffold_49440_28
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31321..32511)
DNA (1191bp) protein (397aa)
hypothetical protein n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B5DDEA
Two-component sensor histidine kinase {ECO:0000313|EMBL:KGQ19320.1}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
signal transduction histidine kinase
2019_SCN_bioreactor_t2_biofilm_scaffold_49440_29
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32508..33200)
DNA (693bp) protein (231aa)
hypothetical protein n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B4455A
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:KGQ19321.1}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
response regulator with CheY-like receiver domain and winged-helix DNA-binding domain
2019_SCN_bioreactor_t2_biofilm_scaffold_49440_30
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33347..34063
DNA (717bp) protein (239aa)
Uncharacterized protein (Fragment) n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=E2NT27_9FIRM
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
Displaying items 1-30 of 495 in total

View Taxonomy