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2019_SCN_bioreactor_t2_biofilm_scaffold_66872

Search features with annotation key words

Displaying items 1-30 of 279 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t2_biofilm_scaffold_66872_1
BJP_IG2103_Dechloromonas_63_51, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..1940)
DNA (1938bp) protein (646aa)
Putative citrate chemoreceptor protein n=1 Tax=Azoarcus sp. (strain BH72) RepID=A1K5G6_AZOSB
tcp; putative citrate chemoreceptor protein
Tax=BJP_IG2103_Dechloromonas_63_51
2019_SCN_bioreactor_t2_biofilm_scaffold_66872_2
Lysobacter concretionis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2025..2693
DNA (669bp) protein (223aa)
membrane protein n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI000312E5C4
Membrane protein {ECO:0000313|EMBL:KGM51912.1}; TaxID=1122185 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter concretionis Ko07 = DSM 16239.;"
hypothetical protein
2019_SCN_bioreactor_t2_biofilm_scaffold_66872_3
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2697..3497
DNA (801bp) protein (267aa)
Conserved hypothetical integral membrane protein n=1 Tax=Xanthomonas campestris pv. raphani 756C RepID=G0CKH6_XANCA
Stenotrophomonas maltophilia strain ZBG7B contig_7, whole genome shotgun sequence {ECO:0000313|EMBL:KIP87543.1}; TaxID=40324 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia (Pseudomonas maltophilia) (Xanthomonas; maltophilia).;"
hypothetical protein
2019_SCN_bioreactor_t2_biofilm_scaffold_66872_4
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3556..5460
DNA (1905bp) protein (635aa)
1-deoxy-D-xylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897}; EC=2.2.1.7 {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897};; 1-deoxyxylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
1-deoxy-D-xylulose-5-phosphate synthase n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WS82_PSEUU
deoxyxylulose-5-phosphate synthase
2019_SCN_bioreactor_t2_biofilm_scaffold_66872_5
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5479..6504)
DNA (1026bp) protein (342aa)
GumN protein n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B77CA5
GumN protein {ECO:0000313|EMBL:EYR70345.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
polysaccharide biosynthesis protein GumN
2019_SCN_bioreactor_t2_biofilm_scaffold_66872_6
Stenotrophomonas sp. SKA14, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6620..7009
DNA (390bp) protein (130aa)
Putative uncharacterized protein n=1 Tax=Stenotrophomonas sp. SKA14 RepID=B8L940_9GAMM
Putative uncharacterized protein {ECO:0000313|EMBL:EED38462.1}; TaxID=391601 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. SKA14.;"
hypothetical protein
2019_SCN_bioreactor_t2_biofilm_scaffold_66872_7
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7016..7705)
DNA (690bp) protein (230aa)
DNA-3-methyladenine glycosylase II n=1 Tax=Xanthomonas hortorum pv. carotae str. M081 RepID=V7ZGJ3_9XANT
DNA-3-methyladenine glycosylase {ECO:0000313|EMBL:KGM55429.1}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
mpg; DNA-3-methyladenine glycosylase
2019_SCN_bioreactor_t2_biofilm_scaffold_66872_8
Lysobacter arseniciresistens, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7702..8067)
DNA (366bp) protein (122aa)
UPF0382 membrane protein n=1 Tax=Xanthomonas translucens pv. graminis ART-Xtg29 RepID=K8YYP6_XANCT
Uncharacterized protein {ECO:0000313|EMBL:KGM57059.1}; TaxID=913325 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter arseniciresistens ZS79.;"
hypothetical protein
2019_SCN_bioreactor_t2_biofilm_scaffold_66872_9
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8176..9237)
DNA (1062bp) protein (354aa)
polyketide cyclase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002D8C921
Polyketide cyclase {ECO:0000313|EMBL:EYR67526.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
hypothetical protein
2019_SCN_bioreactor_t2_biofilm_scaffold_66872_10
Xanthomonas campestris, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9409..10065)
DNA (657bp) protein (219aa)
LuxR family transcriptional regulator n=1 Tax=Xanthomonas sp. M97 RepID=UPI0003A870EA
Two-component system regulatory protein
Two-component system regulatory protein {ECO:0000313|EMBL:CAP52578.1}; TaxID=509169 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas campestris pv. campestris (strain B100).;"
2019_SCN_bioreactor_t2_biofilm_scaffold_66872_11
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10062..11261)
DNA (1200bp) protein (400aa)
psensor histidine kinase n=1 Tax=Xanthomonas sp. M97 RepID=UPI0003B78A0F
Two-component system sensor protein {ECO:0000313|EMBL:KGQ19686.1}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
histidine kinase
2019_SCN_bioreactor_t2_biofilm_scaffold_66872_12
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11393..11992
DNA (600bp) protein (200aa)
acetyltransferase n=1 Tax=Xanthomonas vasicola RepID=UPI0001CC014A
Acetyltransferase {ECO:0000313|EMBL:EYR67529.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
acetyltransferase
2019_SCN_bioreactor_t2_biofilm_scaffold_66872_13
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11989..12762
DNA (774bp) protein (258aa)
septation inhibitor protein n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI0002F4F05A
Probable septum site-determining protein MinC {ECO:0000256|HAMAP-Rule:MF_00267}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
septum site-determining protein MinC
2019_SCN_bioreactor_t2_biofilm_scaffold_66872_14
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12791..13603
DNA (813bp) protein (271aa)
Site-determining protein n=2 Tax=Stenotrophomonas maltophilia RepID=B4SNY8_STRM5
septum site-determining protein MinD
Site-determining protein {ECO:0000256|PIRNR:PIRNR003092}; TaxID=391008 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia (strain R551-3).;"
2019_SCN_bioreactor_t2_biofilm_scaffold_66872_15
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13607..13876
DNA (270bp) protein (90aa)
cell division topological specificity factor n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI0003029D5F
Cell division topological specificity factor {ECO:0000256|HAMAP-Rule:MF_00262, ECO:0000256|SAAS:SAAS00085645}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
cell division topological specificity factor
2019_SCN_bioreactor_t2_biofilm_scaffold_66872_16
Lysobacter sp. A03, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13936..14457
DNA (522bp) protein (174aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WYU3_9GAMM
NODE_29, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ98242.1}; TaxID=1199154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter sp. A03.;"
hypothetical protein
2019_SCN_bioreactor_t2_biofilm_scaffold_66872_17
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14550..15617
DNA (1068bp) protein (356aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI00031FC1A8
Rieske (2Fe-2S) domain-containing protein {ECO:0000313|EMBL:KGQ19678.1}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
(2Fe-2S)-binding protein
2019_SCN_bioreactor_t2_biofilm_scaffold_66872_18
Arenimonas oryziterrae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15614..16885
DNA (1272bp) protein (424aa)
amino acid permease n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B5F24C
Uncharacterized protein {ECO:0000313|EMBL:KFN44790.1}; TaxID=1121015 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas oryziterrae DSM 21050 = YC6267.;"
hypothetical protein
2019_SCN_bioreactor_t2_biofilm_scaffold_66872_19
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16914..18161)
DNA (1248bp) protein (416aa)
MFS transporter n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI0002F60757
Bcr/CflA subfamily drug resistance transporter
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
2019_SCN_bioreactor_t2_biofilm_scaffold_66872_20
GWF1_Xanthomonadales_69_6_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18485..21385
DNA (2901bp) protein (967aa)
gcvP; glycine dehydrogenase (EC:1.4.4.2)
Glycine dehydrogenase [decarboxylating] id=2616480 bin=GWF1_Xanthomonadales_69_6 species=Rhodanobacter sp. 115 genus=Rhodanobacter taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
Tax=GWF1_Xanthomonadales_69_6_curated
2019_SCN_bioreactor_t2_biofilm_scaffold_66872_21
Arenimonas malthae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21545..22993
DNA (1449bp) protein (483aa)
Uncharacterized protein {ECO:0000313|EMBL:KFN45815.1}; TaxID=1384054 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas malthae CC-JY-1.;"
Putative uncharacterized protein id=2801142 bin=GWF1_Xanthomonadales_69_6 species=ACD39 genus=ACD39 taxon_order=ACD39 taxon_class=ACD39 phylum=unknown tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
2019_SCN_bioreactor_t2_biofilm_scaffold_66872_22
Xanthomonas translucens, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23093..25750)
DNA (2658bp) protein (886aa)
Aminopeptidase n=1 Tax=Xanthomonas translucens DAR61454 RepID=L7H5D3_XANCT
Aminopeptidase {ECO:0000313|EMBL:ELQ13219.1}; TaxID=1205753 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas translucens DAR61454.;"
aminopeptidase N
2019_SCN_bioreactor_t2_biofilm_scaffold_66872_23
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25838..26494)
DNA (657bp) protein (219aa)
Channel protein, hemolysin III family n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WRE7_PSEUU
hemolysin III family channel protein
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
2019_SCN_bioreactor_t2_biofilm_scaffold_66872_24
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26593..27609
DNA (1017bp) protein (339aa)
Bll1128 protein n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89VB9_BRADU
Polyhydroxybutyrate depolymerase {ECO:0000313|EMBL:KGT77301.1}; TaxID=375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum.;"
hypothetical protein
2019_SCN_bioreactor_t2_biofilm_scaffold_66872_25
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27673..28965)
DNA (1293bp) protein (431aa)
adenylosuccinate synthetase (EC:6.3.4.4)
Adenylosuccinate synthetase {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520}; Short=AMPSase {ECO:0000256|HAMAP-Rule:MF_00011};; Short=AdSS {ECO:0000256|HAMAP-Rule:MF_00011};; EC=6.3.4.4 {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520};; IMP--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00011}; TaxID=743721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis (strain 11-1).;"
Adenylosuccinate synthetase n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WV39_PSEUU
2019_SCN_bioreactor_t2_biofilm_scaffold_66872_26
Methyloversatilis universalis, Methyloversatilis, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29151..29912)
DNA (762bp) protein (254aa)
hypothetical protein n=1 Tax=Methyloversatilis sp. NVD RepID=UPI00036CDA39
Flagellar brake protein YcgR {ECO:0000256|HAMAP-Rule:MF_01457}; Cyclic di-GMP binding protein YcgR {ECO:0000256|HAMAP-Rule:MF_01457}; TaxID=1000565 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Methyloversatilis.;" source="Methyloversatilis universalis (strain ATCC BAA-1314 / JCM 13912 /; FAM5).;"
YcgR family protein
2019_SCN_bioreactor_t2_biofilm_scaffold_66872_27
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29958..31295)
DNA (1338bp) protein (446aa)
Sodium:dicarboxylate symporter n=1 Tax=Stenotrophomonas maltophilia AU12-09 RepID=M5TZI8_STEMA
Sodium:dicarboxylate symporter {ECO:0000313|EMBL:KGQ19622.1}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
amino acid:proton symporter
2019_SCN_bioreactor_t2_biofilm_scaffold_66872_28
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31406..33139
DNA (1734bp) protein (578aa)
Alkaline phosphatase n=1 Tax=Xanthomonas translucens pv. translucens DSM 18974 RepID=L0SWN5_XANCT
Alkaline phosphatase {ECO:0000313|EMBL:EYR67052.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
alkaline phosphatase
2019_SCN_bioreactor_t2_biofilm_scaffold_66872_29
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33214..33633)
DNA (420bp) protein (140aa)
Membrane protein {ECO:0000313|EMBL:KGQ19619.1}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
Uncharacterised family protein id=2501231 bin=GWF1_Xanthomonadales_69_6 species=unknown genus=Xanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
putative membrane protein
2019_SCN_bioreactor_t2_biofilm_scaffold_66872_30
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33753..34346
DNA (594bp) protein (198aa)
methyltransferase n=1 Tax=Xanthomonas sp. SHU308 RepID=UPI0003625149
Methyltransferase {ECO:0000313|EMBL:KGM53718.1}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
methyltransferase
Displaying items 1-30 of 279 in total

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