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2019_SCN_bioreactor_t3_biofilm_scaffold_7322

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t3_biofilm_scaffold_7322_1
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..813
DNA (813bp) protein (271aa)
GMP synthase [glutamine-hydrolyzing] {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008788}; EC=6.3.5.2 {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008728};; GMP synthetase {ECO:0000256|HAMAP-Rule:MF_00344}; Glutamine amidotransferase {ECO:0000256|HAMAP-Rule:MF_00344}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
guaA; GMP synthase (EC:6.3.5.2)
GMP synthase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B442A7
2019_SCN_bioreactor_t3_biofilm_scaffold_7322_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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821..1246
DNA (426bp) protein (142aa)
acetyltransferase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B37981
Uncharacterized protein {ECO:0000313|EMBL:GAO54088.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
acetyltransferase
2019_SCN_bioreactor_t3_biofilm_scaffold_7322_3
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1251..2087)
DNA (837bp) protein (279aa)
aromatic ring-cleaving dioxygenase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B44DEC
Uncharacterized protein {ECO:0000313|EMBL:GAO54089.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_7322_4
unknown

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comp(2375..4156)
DNA (1782bp) protein (594aa)

This feature has no annotations

2019_SCN_bioreactor_t3_biofilm_scaffold_7322_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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4531..5730
DNA (1200bp) protein (400aa)
Putative bi-functional transferase/deacetylase n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z6L7_9SPHN
Glycosyltransferase {ECO:0000313|EMBL:GAO54091.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
putative bi-functional transferase/deacetylase
2019_SCN_bioreactor_t3_biofilm_scaffold_7322_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5686..6999)
DNA (1314bp) protein (438aa)
Signal transduction histidine kinase n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z6L6_9SPHN
Two component sensor histidine kinase {ECO:0000313|EMBL:GAO54092.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
cpxA; signal transduction histidine kinase
2019_SCN_bioreactor_t3_biofilm_scaffold_7322_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7039..7731)
DNA (693bp) protein (231aa)
transcriptional regulator n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B56CAB
Response regulator in two-component regulatory system with phoQ {ECO:0000313|EMBL:GAO54093.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
two component transcriptional regulator
2019_SCN_bioreactor_t3_biofilm_scaffold_7322_8
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7814..8539
DNA (726bp) protein (242aa)
Type IV secretory pathway VirJ component-like protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z6L3_9SPHN
Type IV secretory pathway, virJ component {ECO:0000313|EMBL:GAO54094.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Type IV secretory pathway VirJ component-like protein
2019_SCN_bioreactor_t3_biofilm_scaffold_7322_9
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8677..9312)
DNA (636bp) protein (212aa)
Uncharacterized protein n=1 Tax=Eimeria mitis RepID=U6K7T9_9EIME
Uncharacterized protein {ECO:0000313|EMBL:GAO54095.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
2019_SCN_bioreactor_t3_biofilm_scaffold_7322_10
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9309..9452)
DNA (144bp) protein (48aa)
RNA polymerase sigma factor rpoE {ECO:0000313|EMBL:GAO54096.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Displaying 10 items

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