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2019_SCN_bioreactor_t3_biofilm_scaffold_20884

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t3_biofilm_scaffold_20884_1
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..169)
DNA (168bp) protein (56aa)
Alpha-glucosidase (EC:3.2.1.20)
Uncharacterized protein {ECO:0000313|EMBL:GAO53410.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
2019_SCN_bioreactor_t3_biofilm_scaffold_20884_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(159..1802)
DNA (1644bp) protein (548aa)
PREDICTED: probable acyl-activating enzyme 1, peroxisomal-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C1734D
3-methylmercaptopropionyl-CoA ligase {ECO:0000313|EMBL:GAO53411.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
medium-chain-fatty-acid--CoA ligase
2019_SCN_bioreactor_t3_biofilm_scaffold_20884_3
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1886..4219)
DNA (2334bp) protein (778aa)
TonB-denpendent receptor n=1 Tax=Sphingomonas sp. PAMC 26621 RepID=UPI00028831C7
Uncharacterized protein {ECO:0000313|EMBL:GAO53412.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
outer membrane receptor protein
2019_SCN_bioreactor_t3_biofilm_scaffold_20884_4
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4394..5323)
DNA (930bp) protein (310aa)
Regulator of octopine catabolism/uptake operon (LysR family) n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AX80_AZOBR
LysR-family transcriptional regulator {ECO:0000313|EMBL:GAO53414.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_20884_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5419..6183
DNA (765bp) protein (255aa)
phytanoyl-CoA dioxygenase n=1 Tax=Poribacteria bacterium WGA-3G RepID=UPI0003B54BB6
Uncharacterized protein {ECO:0000313|EMBL:GAO53415.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
phytanoyl-CoA dioxygenase
2019_SCN_bioreactor_t3_biofilm_scaffold_20884_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6416..7330
DNA (915bp) protein (305aa)
Aldo/keto reductase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G5J3_NOVAD
Oxidoreductase of aldo/keto reductase family {ECO:0000313|EMBL:GAO53416.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
aldo/keto reductase
2019_SCN_bioreactor_t3_biofilm_scaffold_20884_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7356..8441
DNA (1086bp) protein (362aa)
Alkanesulfonate monooxygenase {ECO:0000313|EMBL:GAO53417.1}; EC=1.14.14.5 {ECO:0000313|EMBL:GAO53417.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
alkanesulfonate monooxygenase (EC:1.14.14.5)
Alkanesulfonate monooxygenase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G5J4_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_20884_8
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8459..9829)
DNA (1371bp) protein (457aa)
D-mannonate oxidoreductase {ECO:0000313|EMBL:GAO53418.1}; EC=1.1.1.57 {ECO:0000313|EMBL:GAO53418.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
fructuronate reductase (EC:1.1.1.57)
Fructuronate reductase n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9C596_9SPHN
2019_SCN_bioreactor_t3_biofilm_scaffold_20884_9
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9847..11262)
DNA (1416bp) protein (472aa)
Uronate isomerase {ECO:0000256|HAMAP-Rule:MF_00675, ECO:0000256|SAAS:SAAS00013440}; EC=5.3.1.12 {ECO:0000256|HAMAP-Rule:MF_00675, ECO:0000256|SAAS:SAAS00013438};; Glucuronate isomerase {ECO:0000256|HAMAP-Rule:MF_00675}; Uronic isomerase {ECO:0000256|HAMAP-Rule:MF_00675}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
glucuronate isomerase (EC:5.3.1.12)
Uronate isomerase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=A4XEM2_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_20884_10
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11301..12008)
DNA (708bp) protein (236aa)
GntR family transcriptional regulator n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IDL0_9SPHN
Transcriptional regulator of gntR family {ECO:0000313|EMBL:GAO53420.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
GntR family transcriptional regulator
2019_SCN_bioreactor_t3_biofilm_scaffold_20884_11
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12024..13232
DNA (1209bp) protein (403aa)
bifunctional D-altronate/D-mannonate dehydratase n=1 Tax=Blastomonas sp. AAP53 RepID=UPI0002DC0B99
Starvation sensing protein rspA {ECO:0000313|EMBL:GAO53421.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
mandelate racemase/muconate lactonizing protein
2019_SCN_bioreactor_t3_biofilm_scaffold_20884_12
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13310..14572
DNA (1263bp) protein (421aa)
Major facilitator superfamily MFS_1 n=1 Tax=Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) RepID=D5VMK4_CAUST
Hexuronate transporter {ECO:0000313|EMBL:GAO53422.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
major facilitator superfamily protein
2019_SCN_bioreactor_t3_biofilm_scaffold_20884_13
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14576..16978
DNA (2403bp) protein (801aa)
Alpha-glucosidase {ECO:0000313|EMBL:GAO53423.1}; EC=3.2.1.20 {ECO:0000313|EMBL:GAO53423.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Glycoside hydrolase family 31 n=1 Tax=Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) RepID=D5VMK3_CAUST
glycosyl hydrolase family protein
2019_SCN_bioreactor_t3_biofilm_scaffold_20884_14
Sphingomonas sp. SKA58, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17199..17300
DNA (102bp) protein (34aa)
Symbiosis island integrase n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1NAC5_9SPHN
Symbiosis island integrase {ECO:0000313|EMBL:EAT07883.1}; TaxID=314266 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. (strain SKA58).;"
putative integrase
2019_SCN_bioreactor_t3_biofilm_scaffold_20884_15
Sphingomonas sp. SKA58, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17269..17883
DNA (615bp) protein (205aa)
Symbiosis island integrase n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1NAC5_9SPHN
Symbiosis island integrase {ECO:0000313|EMBL:EAT07883.1}; TaxID=314266 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. (strain SKA58).;"
putative integrase
2019_SCN_bioreactor_t3_biofilm_scaffold_20884_16
Sphingobium lactosutens, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19303..19815)
DNA (513bp) protein (171aa)
hypothetical protein n=1 Tax=alpha proteobacterium LLX12A RepID=UPI00036FC3FC
Uncharacterized protein {ECO:0000313|EMBL:EQB16571.1}; TaxID=1331060 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lactosutens DS20.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_20884_17
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19805..22789)
DNA (2985bp) protein (995aa)
TrwC protein n=1 Tax=alpha proteobacterium LLX12A RepID=UPI000364E3DE
TrwC protein {ECO:0000313|EMBL:AHE53741.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
TrwC protein
2019_SCN_bioreactor_t3_biofilm_scaffold_20884_18
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22786..24834)
DNA (2049bp) protein (683aa)
conjugal transfer protein TraD n=1 Tax=alpha proteobacterium LLX12A RepID=UPI00036B6FAB
Conjugal transfer protein TraD {ECO:0000313|EMBL:AHE53740.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
TraD
2019_SCN_bioreactor_t3_biofilm_scaffold_20884_19
Sphingobium sp. Ant17, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24831..25133)
DNA (303bp) protein (101aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9C806_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EXS71106.1}; TaxID=1461752 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. Ant17.;"
hypothetical protein
Displaying 19 items

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