ggKbase home page

2019_SCN_bioreactor_t3_biofilm_scaffold_21604

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t3_biofilm_scaffold_21604_1
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..855)
DNA (855bp) protein (285aa)
branched-chain alpha-keto acid dehydrogenase E1 component (EC:1.2.4.4)
Branched-chain alpha-keto acid dehydrogenase E1 component n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9I3_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO56354.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
2019_SCN_bioreactor_t3_biofilm_scaffold_21604_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(924..1808)
DNA (885bp) protein (295aa)
Glycerophosphoryl diester phosphodiesterase {ECO:0000313|EMBL:GAO56355.1}; EC=3.1.4.46 {ECO:0000313|EMBL:GAO56355.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Glycerophosphoryl diester phosphodiesterase n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9L4N0_9SPHN
glycerophosphoryl diester phosphodiesterase family protein
2019_SCN_bioreactor_t3_biofilm_scaffold_21604_3
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2103..3002)
DNA (900bp) protein (300aa)
Aliphatic amidase amiE {ECO:0000313|EMBL:GAO56356.1}; EC=3.5.1.4 {ECO:0000313|EMBL:GAO56356.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9I4_NOVAD
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
2019_SCN_bioreactor_t3_biofilm_scaffold_21604_4
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2996..3631)
DNA (636bp) protein (212aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9I5_NOVAD
Histone acetyltransferase HPA2 and related acetyltransferases {ECO:0000313|EMBL:GAO56357.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_21604_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3631..4041)
DNA (411bp) protein (137aa)
hypothetical protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B562C5
Isopropylmalate/homocitrate/citramalate synthases {ECO:0000313|EMBL:GAO56358.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_21604_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4112..6004
DNA (1893bp) protein (631aa)
Prolyl oligopeptidase family protein n=1 Tax=Asticcacaulis biprosthecum C19 RepID=F4QSB3_9CAUL
Uncharacterized protein {ECO:0000313|EMBL:GAO56359.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_21604_7
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6259..6780)
DNA (522bp) protein (174aa)
NAD(P)H dehydrogenase (quinone) {ECO:0000256|HAMAP-Rule:MF_01017, ECO:0000256|SAAS:SAAS00064138}; EC=1.6.5.2 {ECO:0000256|HAMAP-Rule:MF_01017, ECO:0000256|SAAS:SAAS00064138};; NAD(P)H:quinone oxidoreductase {ECO:0000256|HAMAP-Rule:MF_01017}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
NAD(P)H dehydrogenase (quinone) n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZDL0_9SPHN
flavoprotein WrbA
2019_SCN_bioreactor_t3_biofilm_scaffold_21604_8
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7091..7879
DNA (789bp) protein (263aa)
Phosphoribosylaminoimidazole-succinocarboxamide synthase {ECO:0000256|HAMAP-Rule:MF_00137}; EC=6.3.2.6 {ECO:0000256|HAMAP-Rule:MF_00137};; SAICAR synthetase {ECO:0000256|HAMAP-Rule:MF_00137}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
phosphoribosylaminoimidazole-succinocarboxamide synthase (EC:6.3.2.6)
Phosphoribosylaminoimidazole-succinocarboxamide synthase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=PUR7_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_21604_9
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7990..10842
DNA (2853bp) protein (951aa)
Peptidase M16-like protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9J0_NOVAD
Peptidase of M16 family {ECO:0000313|EMBL:GAO56362.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
peptidase M16-like protein
2019_SCN_bioreactor_t3_biofilm_scaffold_21604_10
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10919..11986
DNA (1068bp) protein (356aa)
Protein tyrosine phosphatase {ECO:0000313|EMBL:GAO56363.1}; EC=3.1.3.48 {ECO:0000313|EMBL:GAO56363.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Protein tyrosine/serine phosphatase n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZA86_9SPHN
protein tyrosine/serine phosphatase
2019_SCN_bioreactor_t3_biofilm_scaffold_21604_11
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12207..12725
DNA (519bp) protein (173aa)
Transcriptional regulator, MarR family n=1 Tax=Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) RepID=D5VDG4_CAUST
Transcriptional regulator of marR family {ECO:0000313|EMBL:GAO56364.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
MarR family transcriptional regulator
2019_SCN_bioreactor_t3_biofilm_scaffold_21604_12
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12728..15028
DNA (2301bp) protein (767aa)
TonB-dependent Receptor Plug Domain (Fragment) n=1 Tax=uncultured organism RepID=T1W5E8_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:GAO56365.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
TonB-dependent receptor
2019_SCN_bioreactor_t3_biofilm_scaffold_21604_13
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15271..15504
DNA (234bp) protein (78aa)
Phosphoribosylformylglycinamidine synthase subunit PurS {ECO:0000256|HAMAP-Rule:MF_01926}; Short=FGAM synthase {ECO:0000256|HAMAP-Rule:MF_01926};; EC=6.3.5.3 {ECO:0000256|HAMAP-Rule:MF_01926};; Formylglycinamide ribonucleotide amidotransferase subunit III {ECO:0000256|HAMAP-Rule:MF_01926}; Phosphoribosylformylglycinamidine synthase subunit III {ECO:0000256|HAMAP-Rule:MF_01926}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Phosphoribosylformylglycinamidine synthetase PurS n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZDM0_9SPHN
phosphoribosylformylglycinamidine synthetase PurS
2019_SCN_bioreactor_t3_biofilm_scaffold_21604_14
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15504..16181
DNA (678bp) protein (226aa)
Phosphoribosylformylglycinamidine synthase subunit PurQ {ECO:0000256|HAMAP-Rule:MF_00421, ECO:0000256|SAAS:SAAS00064601}; Short=FGAM synthase {ECO:0000256|HAMAP-Rule:MF_00421};; EC=6.3.5.3 {ECO:0000256|HAMAP-Rule:MF_00421, ECO:0000256|SAAS:SAAS00064588};; Formylglycinamide ribonucleotide amidotransferase subunit I {ECO:0000256|HAMAP-Rule:MF_00421}; Glutaminase PurQ {ECO:0000256|HAMAP-Rule:MF_00421}; Phosphoribosylformylglycinamidine synthase subunit I {ECO:0000256|HAMAP-Rule:MF_00421}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Phosphoribosylformylglycinamidine synthase 1 n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=PURQ_NOVAD
phosphoribosylformylglycinamidine synthase I
2019_SCN_bioreactor_t3_biofilm_scaffold_21604_15
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16200..17114)
DNA (915bp) protein (305aa)
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9J7_NOVAD
Sensory box/GGDEF family protein {ECO:0000313|EMBL:GAO56368.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
Displaying 15 items

View Taxonomy