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2019_SCN_bioreactor_t3_biofilm_scaffold_21909

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t3_biofilm_scaffold_21909_1
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..427)
DNA (426bp) protein (142aa)
Isoquinoline 1-oxidoreductase beta subunit {ECO:0000313|EMBL:GAO54114.1}; EC=1.3.99.16 {ECO:0000313|EMBL:GAO54114.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Twin-arginine translocation pathway signal n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G7N1_NOVAD
twin-arginine translocation pathway signal protein
2019_SCN_bioreactor_t3_biofilm_scaffold_21909_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(424..885)
DNA (462bp) protein (154aa)
Isoquinoline 1-oxidoreductase alpha subunit {ECO:0000313|EMBL:GAO54113.1}; EC=1.3.99.16 {ECO:0000313|EMBL:GAO54113.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
(2Fe-2S)-binding protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G7N0_NOVAD
(2Fe-2S)-binding protein
2019_SCN_bioreactor_t3_biofilm_scaffold_21909_3
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1165..1821
DNA (657bp) protein (219aa)
TetR family transcriptional regulator n=1 Tax=Novosphingobium nitrogenifigens RepID=UPI0003628402
Transcriptional regulator of tetR family {ECO:0000313|EMBL:GAO54112.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
TetR family transcriptional regulator
2019_SCN_bioreactor_t3_biofilm_scaffold_21909_4
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1882..3066
DNA (1185bp) protein (395aa)
hypothetical protein n=1 Tax=alpha proteobacterium LLX12A RepID=UPI0003721F3C
Uncharacterized protein {ECO:0000313|EMBL:GAO54111.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
2019_SCN_bioreactor_t3_biofilm_scaffold_21909_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3492..4382
DNA (891bp) protein (297aa)
Methylamine dehydrogenase heavy chain {ECO:0000313|EMBL:GAO54110.1}; EC=1.4.9.1 {ECO:0000313|EMBL:GAO54110.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
amine dehydrogenase (EC:1.4.99.3)
methylamine dehydrogenase heavy chain precursor n=1 Tax=alpha proteobacterium LLX12A RepID=UPI00037AA195
2019_SCN_bioreactor_t3_biofilm_scaffold_21909_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4379..4969
DNA (591bp) protein (197aa)
hypothetical protein n=1 Tax=alpha proteobacterium LLX12A RepID=UPI00037B0606
Methylamine utilization protein mauE {ECO:0000313|EMBL:GAO54109.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
methylamine utilization protein MauE
2019_SCN_bioreactor_t3_biofilm_scaffold_21909_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4974..5576
DNA (603bp) protein (201aa)
Methylamine utilization protein mauD n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z7Y6_9SPHN
Methylamine utilization protein mauD {ECO:0000313|EMBL:GAO54108.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
methylamine utilization protein mauD
2019_SCN_bioreactor_t3_biofilm_scaffold_21909_8
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5867..6409
DNA (543bp) protein (181aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z7Y4_9SPHN
Cytochrome c in methylamine utilization cluster {ECO:0000313|EMBL:GAO54106.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
cytochrome c class I
2019_SCN_bioreactor_t3_biofilm_scaffold_21909_9
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6441..7439
DNA (999bp) protein (333aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G7N2_NOVAD
Xanthine and CO dehydrogenases maturation factor of xdhC/coxF family {ECO:0000313|EMBL:GAO54105.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_21909_10
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7432..8004
DNA (573bp) protein (191aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G7N3_NOVAD
CTP:molybdopterin cytidylyltransferase {ECO:0000313|EMBL:GAO54104.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_21909_11
unknown

Not on your lists

comp(8045..8863)
DNA (819bp) protein (273aa)

This feature has no annotations

2019_SCN_bioreactor_t3_biofilm_scaffold_21909_12
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9487..10338
DNA (852bp) protein (284aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z5J5_9SPHN
Large protein containing transglutaminase-like domain {ECO:0000313|EMBL:GAO54101.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
Displaying 12 items

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