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2019_SCN_bioreactor_t3_biofilm_scaffold_128840

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t3_biofilm_scaffold_128840_1
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..201)
DNA (201bp) protein (67aa)
Uncharacterized protein {ECO:0000313|EMBL:GAO53289.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
2019_SCN_bioreactor_t3_biofilm_scaffold_128840_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

408..1091
DNA (684bp) protein (228aa)
Cyclic nucleotide-binding protein n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=Q0C260_HYPNA
Transcriptional regulator of Crp/Fnr family {ECO:0000313|EMBL:GAO53291.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
cyclic nucleotide-binding protein
2019_SCN_bioreactor_t3_biofilm_scaffold_128840_3
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1248..4217
DNA (2970bp) protein (990aa)
Uncharacterized protein n=1 Tax=Hydrocarboniphaga effusa AP103 RepID=I7ZGD9_9GAMM
TonB-dependent receptor {ECO:0000313|EMBL:GAO53292.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
TonB-dependent receptor
2019_SCN_bioreactor_t3_biofilm_scaffold_128840_4
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4260..5153)
DNA (894bp) protein (298aa)
Transcriptional regulator, LysR family n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=Q0C261_HYPNA
Transcriptional regulator of lysR family {ECO:0000313|EMBL:GAO53293.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
LysR family transcriptional regulator
2019_SCN_bioreactor_t3_biofilm_scaffold_128840_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5321..6976
DNA (1656bp) protein (552aa)
N-methylhydantoinase B {ECO:0000313|EMBL:GAO53294.1}; EC=3.5.2.14 {ECO:0000313|EMBL:GAO53294.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
5-oxoprolinase (ATP-hydrolyzing) (EC:3.5.2.9)
Putative hydantoin utilization protein b n=1 Tax=Pseudomonas sp. Ag1 RepID=J0PI90_9PSED
2019_SCN_bioreactor_t3_biofilm_scaffold_128840_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6973..9069
DNA (2097bp) protein (699aa)
N-methylhydantoinase A {ECO:0000313|EMBL:GAO53295.1}; EC=3.5.2.14 {ECO:0000313|EMBL:GAO53295.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
5-oxoprolinase (ATP-hydrolyzing) (EC:3.5.2.9)
Uncharacterized protein n=1 Tax=Hydrocarboniphaga effusa AP103 RepID=I7ZF70_9GAMM
2019_SCN_bioreactor_t3_biofilm_scaffold_128840_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9097..10101
DNA (1005bp) protein (335aa)
D-3-phosphoglycerate dehydrogenase {ECO:0000313|EMBL:GAO53296.1}; EC=1.1.1.95 {ECO:0000313|EMBL:GAO53296.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein n=1 Tax=Pseudomonas sp. Ag1 RepID=J0PBT2_9PSED
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein
2019_SCN_bioreactor_t3_biofilm_scaffold_128840_8
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10105..11430
DNA (1326bp) protein (442aa)
hydroxypyruvate reductase (EC:1.1.1.81)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI00035E340D
D-glycerate 2-kinase {ECO:0000313|EMBL:GAO53297.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
2019_SCN_bioreactor_t3_biofilm_scaffold_128840_9
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11427..12503
DNA (1077bp) protein (359aa)
Tartrate dehydrogenase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HQH4_PARL1
Uncharacterized protein {ECO:0000313|EMBL:GAO53298.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
tartrate dehydrogenase
2019_SCN_bioreactor_t3_biofilm_scaffold_128840_10
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12582..13325
DNA (744bp) protein (248aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00037B1C90
Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases {ECO:0000313|EMBL:GAO53299.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
class II aldolase/adducin domain-containing protein
2019_SCN_bioreactor_t3_biofilm_scaffold_128840_11
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13372..13683)
DNA (312bp) protein (104aa)
Uncharacterized protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HQH9_PARL1
Uncharacterized protein {ECO:0000313|EMBL:GAO53300.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_128840_12
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13680..15074)
DNA (1395bp) protein (465aa)
Uncharacterized protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HQH8_PARL1
DNA for 3-methylaspartate ammonia-lyase, glutamate mutase {ECO:0000313|EMBL:GAO53301.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_128840_13
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15408..16679)
DNA (1272bp) protein (424aa)
Phthalate 4,5-dioxygenase oxygenase subunit {ECO:0000313|EMBL:GAO53302.1}; EC=1.14.12.7 {ECO:0000313|EMBL:GAO53302.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
phthalate 4,5-dioxygenase (EC:1.14.12.7)
Phthalate 4,5-dioxygenase n=1 Tax=Salinispora arenicola (strain CNS-205) RepID=A8M132_SALAI
2019_SCN_bioreactor_t3_biofilm_scaffold_128840_14
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16894..19332
DNA (2439bp) protein (813aa)
TonB-dependent receptor n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IHZ8_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO53303.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
TonB-dependent receptor
2019_SCN_bioreactor_t3_biofilm_scaffold_128840_15
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19369..19446
DNA (78bp) protein (26aa)
Catechol 2,3-dioxygenase {ECO:0000313|EMBL:GAO53304.1}; EC=1.13.11.2 {ECO:0000313|EMBL:GAO53304.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Displaying 15 items

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