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2019_SCN_bioreactor_t3_biofilm_scaffold_113224

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t3_biofilm_scaffold_113224_1
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..96
DNA (96bp) protein (32aa)
AAA ATPase, central region n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G4G3_NOVAD
Chaperone protein ClpB {ECO:0000256|RuleBase:RU362034}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
ATPase AAA
2019_SCN_bioreactor_t3_biofilm_scaffold_113224_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

280..2235
DNA (1956bp) protein (652aa)
hypothetical protein n=1 Tax=Blastomonas sp. AAP53 RepID=UPI00037381BE
Prolyl oligopeptidase family protein {ECO:0000313|EMBL:GAO55084.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
putative peptidase
2019_SCN_bioreactor_t3_biofilm_scaffold_113224_3
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2256..3020)
DNA (765bp) protein (255aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8VLM8_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO55085.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_113224_4
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3097..3525)
DNA (429bp) protein (143aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G4G7_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO55086.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_113224_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3589..4971
DNA (1383bp) protein (461aa)
Fumarate hydratase class II {ECO:0000256|HAMAP-Rule:MF_00743}; Short=Fumarase C {ECO:0000256|HAMAP-Rule:MF_00743};; EC=4.2.1.2 {ECO:0000256|HAMAP-Rule:MF_00743};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
class II fumarate hydratase (EC:4.2.1.2)
fumarate hydratase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B2E9DC
2019_SCN_bioreactor_t3_biofilm_scaffold_113224_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5084..6112
DNA (1029bp) protein (343aa)
polysaccharide deacetylase n=1 Tax=Sphingomonas echinoides RepID=UPI00026CA10E
Polysaccharide deacetylase {ECO:0000313|EMBL:GAO55088.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
polysaccharide deacetylase
2019_SCN_bioreactor_t3_biofilm_scaffold_113224_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6119..6637)
DNA (519bp) protein (173aa)
Proline dehydrogenase {ECO:0000313|EMBL:GAO55089.1}; EC=1.5.5.2 {ECO:0000313|EMBL:GAO55089.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Proline dehydrogenase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UVM4_9SPHN
proline dehydrogenase
2019_SCN_bioreactor_t3_biofilm_scaffold_113224_8
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6975..8141)
DNA (1167bp) protein (389aa)
Cellulose biosynthesis (CelD)-like protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WF26_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO55090.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
cellulose biosynthesis (CelD)-like protein
2019_SCN_bioreactor_t3_biofilm_scaffold_113224_9
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8266..9150)
DNA (885bp) protein (295aa)
2-pyrone-4,6-dicarboxylate hydrolase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G4G8_NOVAD
2-pyrone-4,6-dicarboxylic acid hydrolase {ECO:0000313|EMBL:GAO55091.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
amidohydrolase
2019_SCN_bioreactor_t3_biofilm_scaffold_113224_10
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9264..10202)
DNA (939bp) protein (313aa)
PrpF protein n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6F1Q7_SPHCR
PrpF protein
PrpF protein {ECO:0000313|EMBL:AEG51473.1}; TaxID=690566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum L-1.;"
2019_SCN_bioreactor_t3_biofilm_scaffold_113224_11
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10254..10928)
DNA (675bp) protein (225aa)
4-carboxy-4-hydroxy-2-oxoadipate aldolase {ECO:0000313|EMBL:GAO55093.1}; EC=4.1.3.17 {ECO:0000313|EMBL:GAO55093.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
4-carboxy-4-hydroxy-2-oxoadipate aldolase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G4H0_NOVAD
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_113224_12
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11780..12055
DNA (276bp) protein (92aa)
Transcriptional regulator, LysR family n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G4H1_NOVAD
Transcriptional regulator of lysR family {ECO:0000313|EMBL:GAO55094.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
LysR family transcriptional regulator
2019_SCN_bioreactor_t3_biofilm_scaffold_113224_13
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12119..12940
DNA (822bp) protein (274aa)
6-phosphogluconate dehydrogenase, NAD-binding protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G4H2_NOVAD
3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases {ECO:0000313|EMBL:GAO55095.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
6-phosphogluconate dehydrogenase
2019_SCN_bioreactor_t3_biofilm_scaffold_113224_14
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12937..13962
DNA (1026bp) protein (342aa)
4-oxalomesaconate hydratase {ECO:0000313|EMBL:GAO55096.1}; EC=4.2.1.83 {ECO:0000313|EMBL:GAO55096.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
4-oxalomesaconate hydratase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G4H3_NOVAD
amidohydrolase
2019_SCN_bioreactor_t3_biofilm_scaffold_113224_15
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13959..14375
DNA (417bp) protein (139aa)
Protocatechuate 4,5-dioxygenase alpha chain {ECO:0000313|EMBL:GAO55097.1}; EC=1.13.11.8 {ECO:0000313|EMBL:GAO55097.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
protocatechuate 4,5-dioxygenase subunit alpha (EC:1.13.11.8)
Protocatechuate 4,5-dioxygenase alpha subunit n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G4H4_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_113224_16
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14377..14682
DNA (306bp) protein (102aa)
Protocatechuate 4,5-dioxygenase beta chain {ECO:0000313|EMBL:GAO55098.1}; EC=1.13.11.8 {ECO:0000313|EMBL:GAO55098.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
protocatechuate 4,5-dioxygenase subunit beta (EC:1.13.11.8)
Protocatechuate 4,5-dioxygenase beta subunit n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G4H5_NOVAD
Displaying 16 items

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