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2019_SCN_bioreactor_t3_biofilm_scaffold_90009

Search features with annotation key words

Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t3_biofilm_scaffold_90009_1
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(147..1001)
DNA (855bp) protein (285aa)
p-hydroxycinnamoyl CoA hydratase/lyase (EC:4.2.1.17)
Enoyl-CoA hydratase/isomerase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G7R4_NOVAD
Enoyl-CoA hydratase/isomerase {ECO:0000313|EMBL:ABD26109.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
2019_SCN_bioreactor_t3_biofilm_scaffold_90009_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1047..2447)
DNA (1401bp) protein (467aa)
Vanillin dehydrogenase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G7R5_NOVAD
VANILLIN dehydrogenase oxidoreductase protein {ECO:0000313|EMBL:GAO53876.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
aldehyde dehydrogenase
2019_SCN_bioreactor_t3_biofilm_scaffold_90009_3
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2847..3839)
DNA (993bp) protein (331aa)
Alcohol dehydrogenase superfamily, zinc-containing n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G7R6_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO53877.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
alcohol dehydrogenase
2019_SCN_bioreactor_t3_biofilm_scaffold_90009_4
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4284..5204)
DNA (921bp) protein (307aa)
Two component LuxR family transcriptional regulator n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z8K7_9SPHN
Two-component response regulator {ECO:0000313|EMBL:GAO53878.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
two component LuxR family transcriptional regulator
2019_SCN_bioreactor_t3_biofilm_scaffold_90009_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5206..6891)
DNA (1686bp) protein (562aa)
histidine kinase (EC:2.7.3.-)
Histidine kinase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G7R9_NOVAD
Signal transduction histidine kinase {ECO:0000313|EMBL:GAO53879.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
2019_SCN_bioreactor_t3_biofilm_scaffold_90009_6
unknown

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7154..7333
DNA (180bp) protein (60aa)

This feature has no annotations

2019_SCN_bioreactor_t3_biofilm_scaffold_90009_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8486..9505
DNA (1020bp) protein (340aa)
TonB-dependent receptor n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G7S1_NOVAD
TonB-dependent receptor {ECO:0000313|EMBL:GAO53881.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
TonB-dependent receptor
2019_SCN_bioreactor_t3_biofilm_scaffold_90009_8
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9936..12347
DNA (2412bp) protein (804aa)
Alpha-1,4 glucan phosphorylase {ECO:0000256|RuleBase:RU000587}; EC=2.4.1.1 {ECO:0000256|RuleBase:RU000587};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
glycogen/starch/alpha-glucan phosphorylase (EC:2.4.1.1)
Phosphorylase n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z8K2_9SPHN
2019_SCN_bioreactor_t3_biofilm_scaffold_90009_9
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12356..14524
DNA (2169bp) protein (723aa)
1,4-alpha-glucan branching enzyme GlgB {ECO:0000256|HAMAP-Rule:MF_00685}; EC=2.4.1.18 {ECO:0000256|HAMAP-Rule:MF_00685};; 1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase {ECO:0000256|HAMAP-Rule:MF_00685}; Alpha-(1->4)-glucan branching enzyme {ECO:0000256|HAMAP-Rule:MF_00685}; Glycogen branching enzyme {ECO:0000256|HAMAP-Rule:MF_00685}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
glycogen branching enzyme (EC:2.4.1.18)
1,4-alpha-glucan branching enzyme GlgB n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=GLGB_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_90009_10
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14544..15014
DNA (471bp) protein (157aa)
Glucose-1-phosphate adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00624, ECO:0000256|SAAS:SAAS00055636}; EC=2.7.7.27 {ECO:0000256|HAMAP-Rule:MF_00624, ECO:0000256|SAAS:SAAS00055636};; ADP-glucose pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00624}; ADP-glucose synthase {ECO:0000256|HAMAP-Rule:MF_00624}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
glucose-1-phosphate adenylyltransferase (EC:2.7.7.27)
glucose-1-phosphate adenylyltransferase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B725EA
Displaying 10 items

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