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2019_SCN_bioreactor_t3_biofilm_scaffold_16101

Search features with annotation key words

Displaying items 1-30 of 86 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t3_biofilm_scaffold_16101_1
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..381
DNA (381bp) protein (127aa)
Major facilitator superfamily protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKX9_9SPHN
Major facilitator family transporter {ECO:0000313|EMBL:GAO53311.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
major facilitator superfamily protein
2019_SCN_bioreactor_t3_biofilm_scaffold_16101_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(471..872)
DNA (402bp) protein (134aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U3A736_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO53312.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_16101_3
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(907..1359)
DNA (453bp) protein (151aa)
Putative transcriptional regulator (MarR family protein) n=1 Tax=Bradyrhizobium sp. STM 3809 RepID=H0T7M0_9BRAD
Transcriptional regulator of marR family {ECO:0000313|EMBL:GAO53313.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
putative transcriptional regulator
2019_SCN_bioreactor_t3_biofilm_scaffold_16101_4
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1494..2450)
DNA (957bp) protein (319aa)
LysR family transcriptional regulator n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IMK4_9SPHN
Transcriptional regulator of lysR family {ECO:0000313|EMBL:GAO53324.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
LysR family transcriptional regulator
2019_SCN_bioreactor_t3_biofilm_scaffold_16101_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2589..3872
DNA (1284bp) protein (428aa)
Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase {ECO:0000313|EMBL:GAO53325.1}; EC=2.6.1.19 {ECO:0000313|EMBL:GAO53325.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
4-aminobutyrate aminotransferase n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RDM1_PHEZH
4-aminobutyrate aminotransferase
2019_SCN_bioreactor_t3_biofilm_scaffold_16101_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3872..5353
DNA (1482bp) protein (494aa)
NAD(P)+ dependent succinate-semialdehyde dehydrogenase {ECO:0000313|EMBL:GAO53326.1}; EC=1.2.1.16 {ECO:0000313|EMBL:GAO53326.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Uncharacterized protein n=1 Tax=Sphingobium ummariense RL-3 RepID=T0J2L5_9SPHN
gabD; succinate-semialdehyde dehydrogenase
2019_SCN_bioreactor_t3_biofilm_scaffold_16101_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5356..8715)
DNA (3360bp) protein (1120aa)
Uncharacterized protein n=1 Tax=Sphingobium indicum B90A RepID=I5BFI4_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO53327.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_16101_8
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8853..9995
DNA (1143bp) protein (381aa)
sterol desaturase (EC:1.14.21.6)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2Y407_9SPHN
Sterol desaturase {ECO:0000313|EMBL:GAO53328.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
2019_SCN_bioreactor_t3_biofilm_scaffold_16101_9
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10039..10623
DNA (585bp) protein (195aa)
TetR family transcriptional regulator n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B7ABC7
Transcriptional regulator of tetR family {ECO:0000313|EMBL:GAO53329.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
TetR-family transcriptional regulator
2019_SCN_bioreactor_t3_biofilm_scaffold_16101_10
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10626..11900)
DNA (1275bp) protein (425aa)
Alanine racemase {ECO:0000256|HAMAP-Rule:MF_01201}; EC=5.1.1.1 {ECO:0000256|HAMAP-Rule:MF_01201};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
alanine racemase (EC:5.1.1.1)
alanine racemase n=1 Tax=Sandarakinorhabdus limnophila RepID=UPI0003B6CDCB
2019_SCN_bioreactor_t3_biofilm_scaffold_16101_11
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11900..13438)
DNA (1539bp) protein (513aa)
D-aminoacylase {ECO:0000313|EMBL:GAO53331.1}; EC=3.5.1.81 {ECO:0000313|EMBL:GAO53331.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
N-acyl-D-glutamate deacylase (EC:3.5.1.82)
Uncharacterized protein n=1 Tax=Asticcacaulis benevestitus DSM 16100 = ATCC BAA-896 RepID=V4PKL1_9CAUL
2019_SCN_bioreactor_t3_biofilm_scaffold_16101_12
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13576..14844)
DNA (1269bp) protein (423aa)
UPI0003CFF970 related cluster n=1 Tax=unknown RepID=UPI0003CFF970
Transporter, MFS superfamily {ECO:0000313|EMBL:GAO53332.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
major facilitator superfamily protein
2019_SCN_bioreactor_t3_biofilm_scaffold_16101_13
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14988..15695)
DNA (708bp) protein (236aa)
membrane protein n=1 Tax=alpha proteobacterium LLX12A RepID=UPI0003779C65
Uncharacterized protein {ECO:0000313|EMBL:GAO53334.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_16101_14
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15715..17085)
DNA (1371bp) protein (457aa)
hypothetical protein n=1 Tax=Sphingobium yanoikuyae RepID=UPI000262C663
Uncharacterized protein {ECO:0000313|EMBL:GAO56117.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_16101_15
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17087..17506)
DNA (420bp) protein (140aa)
Uncharacterized protein n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9CLP6_SPHYA
Uncharacterized protein {ECO:0000313|EMBL:GAO56116.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_16101_16
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17508..18398)
DNA (891bp) protein (297aa)
Uncharacterized protein n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9D6J6_SPHYA
Uncharacterized protein {ECO:0000313|EMBL:GAO56115.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_16101_17
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18423..20270)
DNA (1848bp) protein (616aa)
amidohydrolase n=1 Tax=Sphingomonas elodea RepID=UPI000263072B
Exoenzymes regulatory protein aepA {ECO:0000313|EMBL:GAO56114.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
amidohydrolase 3
2019_SCN_bioreactor_t3_biofilm_scaffold_16101_18
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20315..20500)
DNA (186bp) protein (62aa)
XapX domain protein n=1 Tax=Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) RepID=D5VJN7_CAUST
Uncharacterized protein {ECO:0000313|EMBL:GAO53339.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
XapX domain-containing protein
2019_SCN_bioreactor_t3_biofilm_scaffold_16101_19
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20530..22401
DNA (1872bp) protein (624aa)
Putative major facilitator superfamily transporter n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2Y400_9SPHN
MFS transporter {ECO:0000313|EMBL:GAO53340.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_16101_20
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22398..23519
DNA (1122bp) protein (374aa)
Putative efflux system protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YI78_9SPHN
HlyD family secretion protein {ECO:0000313|EMBL:GAO53341.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
secretion protein HlyD family protein
2019_SCN_bioreactor_t3_biofilm_scaffold_16101_21
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23519..24925
DNA (1407bp) protein (469aa)
Putative outer membrane efflux protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZZ14_9SPHN
RND efflux system of outer membrane lipoprotein, nodT family {ECO:0000313|EMBL:GAO53342.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
RND efflux system outer membrane lipoprotein
2019_SCN_bioreactor_t3_biofilm_scaffold_16101_22
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24900..26501)
DNA (1602bp) protein (534aa)
Uncharacterized protein {ECO:0000313|EMBL:GAO53343.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
2019_SCN_bioreactor_t3_biofilm_scaffold_16101_23
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26676..27176
DNA (501bp) protein (167aa)
hypothetical protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B7A366
Uncharacterized protein {ECO:0000313|EMBL:GAO53345.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_16101_24
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27230..27838
DNA (609bp) protein (203aa)
Uncharacterized protein n=1 Tax=Sphingobium ummariense RL-3 RepID=T0K4U1_9SPHN
Transcriptional regulator of tetR family {ECO:0000313|EMBL:GAO53346.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
TetR-family transcriptional regulator
2019_SCN_bioreactor_t3_biofilm_scaffold_16101_25
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28319..29185
DNA (867bp) protein (289aa)
HlyD-family secretion protein n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9L0Z0_9SPHN
Co/Zn/Cd efflux system membrane fusion protein {ECO:0000313|EMBL:GAO53347.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
HlyD-family secretion protein
2019_SCN_bioreactor_t3_biofilm_scaffold_16101_26
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29151..29495
DNA (345bp) protein (115aa)
Efflux transporter, RND family, MFP subunit n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6F178_SPHCR
Co/Zn/Cd efflux system membrane fusion protein {ECO:0000313|EMBL:GAO53347.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
RND family efflux transporter MFP subunit
2019_SCN_bioreactor_t3_biofilm_scaffold_16101_27
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29536..32724
DNA (3189bp) protein (1063aa)
Transporter n=1 Tax=Sphingobium ummariense RL-3 RepID=T0K548_9SPHN
RND efflux system, inner membrane transporter cmeB {ECO:0000313|EMBL:GAO53348.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
putative multidrug efflux pump
2019_SCN_bioreactor_t3_biofilm_scaffold_16101_28
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33891..34250
DNA (360bp) protein (120aa)
Transporter n=1 Tax=Sphingobium ummariense RL-3 RepID=T0KEG2_9SPHN
RND efflux system, outer membrane lipoprotein cmeC {ECO:0000313|EMBL:GAO53349.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
NodT family RND efflux system outer membrane lipoprotein
2019_SCN_bioreactor_t3_biofilm_scaffold_16101_29
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34632..35306)
DNA (675bp) protein (225aa)
4-carboxy-4-hydroxy-2-oxoadipate aldolase {ECO:0000313|EMBL:GAO53351.1}; EC=4.1.3.17 {ECO:0000313|EMBL:GAO53351.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Dimethylmenaquinone methyltransferase family protein n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2J6A5_POLGS
dimethylmenaquinone methyltransferase
2019_SCN_bioreactor_t3_biofilm_scaffold_16101_30
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35594..36916
DNA (1323bp) protein (441aa)
Putative Tetracycline resistance protein TetB n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CS14_THIA3
Multidrug efflux protein {ECO:0000313|EMBL:GAO53352.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
major facilitator superfamily protein
Displaying items 1-30 of 86 in total

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