name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
2019_SCN_bioreactor_t3_biofilm_scaffold_18584_1
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
1..369
|
RNA polymerase sigma factor RpoD n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z8Y4_9SPHN
RNA polymerase sigma factor RpoD
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
|
|
2019_SCN_bioreactor_t3_biofilm_scaffold_18584_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
595..2919
|
TonB-denpendent receptor n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B2FD88
TonB-dependent receptor {ECO:0000313|EMBL:GAO55581.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
TonB-dependent receptor
|
|
2019_SCN_bioreactor_t3_biofilm_scaffold_18584_3
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
3080..3517
|
Ribose 5-phosphate isomerase B {ECO:0000313|EMBL:GAO55579.1}; EC=5.3.1.6 {ECO:0000313|EMBL:GAO55579.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
ribose 5-phosphate isomerase B (EC:5.3.1.6)
Ribose 5-phosphate isomerase B n=1 Tax=Novosphingobium sp. AP12 RepID=J3AF11_9SPHN
|
|
2019_SCN_bioreactor_t3_biofilm_scaffold_18584_4
Burkholderia ambifaria, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(3763..3921)
|
Uncharacterized protein n=1 Tax=Burkholderia ambifaria IOP40-10 RepID=B1FSA9_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EDS99561.1}; TaxID=396596 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia ambifaria IOP40-10.;"
|
|
2019_SCN_bioreactor_t3_biofilm_scaffold_18584_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
4920..5129
|
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ILQ7_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO55577.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
|
|
2019_SCN_bioreactor_t3_biofilm_scaffold_18584_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
5133..5594
|
Transcriptional repressor NrdR n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z8Y0_9SPHN
Transcriptional repressor NrdR {ECO:0000256|HAMAP-Rule:MF_00440, ECO:0000256|SAAS:SAAS00087559}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
nrdR; transcriptional regulator NrdR
|
|
2019_SCN_bioreactor_t3_biofilm_scaffold_18584_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
5591..6340
|
rRNA methyltransferase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B72A4D
tRNA:Cm32/Um32 methyltransferase {ECO:0000313|EMBL:GAO55575.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
tRNA/rRNA methyltransferase
|
|
2019_SCN_bioreactor_t3_biofilm_scaffold_18584_8
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(6359..6688)
|
UPI0003D067B5 related cluster n=1 Tax=unknown RepID=UPI0003D067B5
Isochorismate pyruvate-lyase {ECO:0000313|EMBL:GAO55574.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
chorismate mutase
|
|
2019_SCN_bioreactor_t3_biofilm_scaffold_18584_9
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
6924..7535
|
30S ribosomal protein S4 n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=RS4_NOVAD
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
rpsD; 30S ribosomal protein S4
|
|
2019_SCN_bioreactor_t3_biofilm_scaffold_18584_10
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
7719..7916
|
hypothetical protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B4B78F
Uncharacterized protein {ECO:0000313|EMBL:GAO55572.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
|
|
2019_SCN_bioreactor_t3_biofilm_scaffold_18584_11
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(7930..9921)
|
Peptidase S9 prolyl oligopeptidase active site domain protein n=1 Tax=Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) RepID=D5VEP0_CAUST
Prolyl oligopeptidase family protein {ECO:0000313|EMBL:GAO55571.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
prolyl oligopeptidase
|
|
2019_SCN_bioreactor_t3_biofilm_scaffold_18584_12
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(10009..11133)
|
Queuine tRNA-ribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777}; EC=2.4.2.29 {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777};; Guanine insertion enzyme {ECO:0000256|HAMAP-Rule:MF_00168}; tRNA-guanine transglycosylase {ECO:0000256|HAMAP-Rule:MF_00168}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
tgt; queuine tRNA-ribosyltransferase (EC:2.4.2.29)
queuine tRNA-ribosyltransferase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B3A415
|
|
2019_SCN_bioreactor_t3_biofilm_scaffold_18584_13
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
11226..11981
|
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G638_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO55569.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
|
|
2019_SCN_bioreactor_t3_biofilm_scaffold_18584_14
unknown
|
Not on your lists |
12186..13085
|
This feature has no annotations |
|
2019_SCN_bioreactor_t3_biofilm_scaffold_18584_15
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(13052..14065)
|
UPF0176 protein LH128_28448 n=1 Tax=Sphingomonas sp. LH128 RepID=J8V9M0_9SPHN
UPF0176 protein NMD1_02719 {ECO:0000256|HAMAP-Rule:MF_00469}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
|
|
2019_SCN_bioreactor_t3_biofilm_scaffold_18584_16
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
14173..15711
|
acetyl-CoA acetyltransferase (EC:2.3.1.9)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G5D5_NOVAD
Acetyl-CoA acetyltransferase {ECO:0000313|EMBL:GAO55566.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
|
|
2019_SCN_bioreactor_t3_biofilm_scaffold_18584_17
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(15771..17204)
|
Aldehyde dehydrogenase {ECO:0000313|EMBL:GAO55565.1}; EC=1.2.1.3 {ECO:0000313|EMBL:GAO55565.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
aldehyde dehydrogenase (EC:1.2.1.3)
Aldehyde dehydrogenase (NAD+) n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G5D4_NOVAD
|
|
2019_SCN_bioreactor_t3_biofilm_scaffold_18584_18
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(17248..18360)
|
Alcohol dehydrogenase {ECO:0000313|EMBL:GAO55564.1}; EC=1.1.1.1 {ECO:0000313|EMBL:GAO55564.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Alcohol dehydrogenase, zinc-containing n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G5D3_NOVAD
alcohol dehydrogenase
|
|
2019_SCN_bioreactor_t3_biofilm_scaffold_18584_19
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(18553..19395)
|
sorbitol dehydrogenase (EC:1.1.1.14)
UPI0003D01120 related cluster n=1 Tax=unknown RepID=UPI0003D01120
Threonine dehydrogenase and related Zn-dependent dehydrogenases {ECO:0000313|EMBL:GAO55563.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
|
|
2019_SCN_bioreactor_t3_biofilm_scaffold_18584_20
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(19414..20640)
|
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:GAO55562.1}; EC=1.3.8.7 {ECO:0000313|EMBL:GAO55562.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Acyl-CoA dehydrogenase-like protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G5C6_NOVAD
acyl-CoA dehydrogenase
|
|
2019_SCN_bioreactor_t3_biofilm_scaffold_18584_21
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(20662..21399)
|
Short-chain dehydrogenase/reductase SDR n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G5C7_NOVAD
3-oxoacyl-(Acyl-carrier protein) reductase {ECO:0000313|EMBL:GAO55561.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
short-chain dehydrogenase/reductase SDR
|
|
2019_SCN_bioreactor_t3_biofilm_scaffold_18584_22
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(21488..23848)
|
TonB-dependent receptor n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G5C8_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO55560.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
TonB-dependent receptor
|
|
2019_SCN_bioreactor_t3_biofilm_scaffold_18584_23
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
23970..24989
|
Helix-turn-helix, AraC domain protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZDE5_9SPHN
Transcriptional regulator of araC family {ECO:0000313|EMBL:GAO55559.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Helix-turn-helix AraC domain-containing protein
|
|
2019_SCN_bioreactor_t3_biofilm_scaffold_18584_24
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
25136..26677
|
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI000380A1AE
Uncharacterized protein {ECO:0000313|EMBL:GAO55558.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
TonB-dependent receptor
|
|
2019_SCN_bioreactor_t3_biofilm_scaffold_18584_25
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
26679..27314
|
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI000380A1AE
Uncharacterized protein {ECO:0000313|EMBL:GAO55558.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
TonB-dependent receptor
|
|
2019_SCN_bioreactor_t3_biofilm_scaffold_18584_26
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
27314..28558
|
linC; linalool 8-monooxygenase (EC:1.14.99.28)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI000369EAC0
Uncharacterized protein {ECO:0000313|EMBL:GAO55557.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
|
|
2019_SCN_bioreactor_t3_biofilm_scaffold_18584_27
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
28570..29436
|
AraC family transcriptional regulator n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B55707
Transcriptional regulator of araC family {ECO:0000313|EMBL:GAO55556.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
AraC family transcriptional regulator
|
|
2019_SCN_bioreactor_t3_biofilm_scaffold_18584_28
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
29506..30345
|
glycosyl transferase family 1 n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B68DE7
Glutathione-regulated potassium-efflux system ATP-binding protein {ECO:0000313|EMBL:GAO55555.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
ABC transporter-like protein
|