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2019_SCN_bioreactor_t3_biofilm_scaffold_116944

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t3_biofilm_scaffold_116944_1
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..646)
DNA (645bp) protein (215aa)
2-oxoglutarate dehydrogenase E1 component {ECO:0000313|EMBL:GAO56962.1}; EC=1.2.4.2 {ECO:0000313|EMBL:GAO56962.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
sucA; 2-oxoglutarate dehydrogenase E1 (EC:1.2.4.2)
2-oxoglutarate dehydrogenase E1 component n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G948_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_116944_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(957..1919)
DNA (963bp) protein (321aa)
Malate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00487, ECO:0000256|SAAS:SAAS00057904}; EC=1.1.1.37 {ECO:0000256|HAMAP-Rule:MF_00487, ECO:0000256|SAAS:SAAS00057904};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
malate dehydrogenase (EC:1.1.1.37)
malate dehydrogenase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B52D26
2019_SCN_bioreactor_t3_biofilm_scaffold_116944_3
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2426..2710
DNA (285bp) protein (95aa)
tRNA/rRNA methyltransferase n=1 Tax=Sphingomonas sp. MM-1 RepID=M4SD34_9SPHN
GIY-YIG nuclease superfamily protein {ECO:0000313|EMBL:AKH44220.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
tRNA/rRNA methyltransferase
2019_SCN_bioreactor_t3_biofilm_scaffold_116944_4
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2949..3266)
DNA (318bp) protein (106aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G945_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO56958.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_116944_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3578..4537
DNA (960bp) protein (320aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G8F7_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO56957.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_116944_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4574..4954)
DNA (381bp) protein (127aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZDB9_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO56956.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_116944_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5009..5650)
DNA (642bp) protein (214aa)
Cytidylate kinase {ECO:0000256|HAMAP-Rule:MF_00238}; Short=CK {ECO:0000256|HAMAP-Rule:MF_00238};; EC=2.7.4.25 {ECO:0000256|HAMAP-Rule:MF_00238};; Cytidine monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00238}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
cytidylate kinase (EC:2.7.4.14)
Cytidylate kinase n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZDB8_9SPHN
2019_SCN_bioreactor_t3_biofilm_scaffold_116944_8
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5653..5901)
DNA (249bp) protein (83aa)
Putative permease n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G8Q4_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO56954.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
permease
2019_SCN_bioreactor_t3_biofilm_scaffold_116944_9
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5929..7323)
DNA (1395bp) protein (465aa)
3-phosphoshikimate 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00210}; EC=2.5.1.19 {ECO:0000256|HAMAP-Rule:MF_00210};; 5-enolpyruvylshikimate-3-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00210}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
3-phosphoshikimate 1-carboxyvinyltransferase (EC:2.5.1.19)
3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=AROA_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_116944_10
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7487..7804
DNA (318bp) protein (106aa)
hypothetical protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B44CC8
Uncharacterized protein {ECO:0000313|EMBL:GAO56951.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_116944_11
Methylotenera versatilis, Methylotenera, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8244..8894)
DNA (651bp) protein (217aa)
Uncharacterized protein n=1 Tax=Methylotenera sp. (strain 301) RepID=D7DND0_METS0
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADI30931.1}; TaxID=666681 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylotenera.;" source="Methylotenera versatilis (strain 301).;"
2019_SCN_bioreactor_t3_biofilm_scaffold_116944_12
RHI_Rhodobacterales_62_75, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9041..9289)
DNA (249bp) protein (83aa)
hypothetical protein n=1 Tax=Pseudorhodobacter ferrugineus RepID=UPI0003B45E00
Tax=RIFCSPHIGHO2_12_FULL_Rhodobacterales_62_75_curated
2019_SCN_bioreactor_t3_biofilm_scaffold_116944_13
unknown

Not on your lists

comp(9291..9620)
DNA (330bp) protein (110aa)

This feature has no annotations

2019_SCN_bioreactor_t3_biofilm_scaffold_116944_14
unknown

Not on your lists

comp(9614..9871)
DNA (258bp) protein (86aa)

This feature has no annotations

2019_SCN_bioreactor_t3_biofilm_scaffold_116944_15
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9868..10305)
DNA (438bp) protein (146aa)
Uncharacterized protein n=1 Tax=Pseudomonas stutzeri TS44 RepID=I4JGH3_PSEST
Uncharacterized protein {ECO:0000313|EMBL:EIK51563.1}; TaxID=477228 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri TS44.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_116944_16
Xylella fastidiosa, Xylella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10305..10778)
DNA (474bp) protein (158aa)
Uncharacterized protein n=2 Tax=Xylella fastidiosa RepID=Q3R082_XYLFS
Uncharacterized protein {ECO:0000313|EMBL:EAO13971.1}; TaxID=155919 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xylella.;" source="Xylella fastidiosa Dixon.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_116944_17
Octadecabacter antarcticus, Octadecabacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11048..12037
DNA (990bp) protein (330aa)
Uncharacterized protein n=1 Tax=Octadecabacter antarcticus 307 RepID=M9RAW0_9RHOB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGI69789.1}; TaxID=391626 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Octadecabacter.;" source="Octadecabacter antarcticus 307.;"
2019_SCN_bioreactor_t3_biofilm_scaffold_116944_18
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12174..13559)
DNA (1386bp) protein (462aa)
Putative uncharacterized protein n=1 Tax=Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50) RepID=Q7WFY0_BORBR
Uncharacterized protein {ECO:0000313|EMBL:KEQ55486.1}; TaxID=46429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_116944_19
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13721..13978)
DNA (258bp) protein (86aa)
Uncharacterized protein n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4R1T6_BREDI
Uncharacterized protein {ECO:0000313|EMBL:EGF94328.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
2019_SCN_bioreactor_t3_biofilm_scaffold_116944_20
Verrucomicrobiae bacterium DG1235, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

14279..15592
DNA (1314bp) protein (438aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI0003809785
Putative uncharacterized protein {ECO:0000313|EMBL:EDY84327.1}; TaxID=382464 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales.;" source="Verrucomicrobiae bacterium DG1235.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_116944_21
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15593..16879)
DNA (1287bp) protein (429aa)
Putative prophage CP4-6 integrase n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4R1T7_BREDI
Putative prophage CP4-6 integrase {ECO:0000313|EMBL:EGF94329.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
int; phage integrase
2019_SCN_bioreactor_t3_biofilm_scaffold_116944_22
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17174..18076)
DNA (903bp) protein (301aa)
2OG-Fe(II) oxygenase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G8P9_NOVAD
Oxidoreductase {ECO:0000313|EMBL:GAO56950.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
2OG-Fe(II) oxygenase
2019_SCN_bioreactor_t3_biofilm_scaffold_116944_23
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18138..18575
DNA (438bp) protein (146aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G8P8_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO56949.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_116944_24
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18655..18900
DNA (246bp) protein (82aa)
hypothetical protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B7B59E
Uncharacterized protein {ECO:0000313|EMBL:GAO56948.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_116944_25
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18920..20242)
DNA (1323bp) protein (441aa)
Major facilitator superfamily MFS_1 n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G8P5_NOVAD
1-acyl-sn-glycerol-3-phosphate acyltransferase {ECO:0000313|EMBL:GAO56947.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
major facilitator transporter
2019_SCN_bioreactor_t3_biofilm_scaffold_116944_26
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20463..21023
DNA (561bp) protein (187aa)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase {ECO:0000313|EMBL:GAO56946.1}; EC=2.7.8.5 {ECO:0000313|EMBL:GAO56946.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC:2.7.8.5)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G8P4_NOVAD
Displaying 26 items

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