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2019_SCN_bioreactor_t3_biofilm_scaffold_39715

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t3_biofilm_scaffold_39715_1
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..392
DNA (390bp) protein (130aa)
Transcriptional regulator, TetR family n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G7P9_NOVAD
Transcriptional regulator of tetR family {ECO:0000313|EMBL:GAO57019.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
TetR family transcriptional regulator
2019_SCN_bioreactor_t3_biofilm_scaffold_39715_2
Massilia timonae, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(507..1055)
DNA (549bp) protein (183aa)
hypothetical protein n=1 Tax=Xanthomonas vasicola RepID=UPI000370AD75
Uncharacterized protein {ECO:0000313|EMBL:EKU82860.1}; TaxID=883126 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia timonae CCUG 45783.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_39715_3
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1113..1997)
DNA (885bp) protein (295aa)
LysR family transcriptional regulator n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B5680E
Aromatic hydrocarbon utilization transcriptional regulator catR {ECO:0000313|EMBL:GAO57018.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
LysR family transcriptional regulator
2019_SCN_bioreactor_t3_biofilm_scaffold_39715_4
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2089..3273
DNA (1185bp) protein (395aa)
Glutaryl-CoA dehydrogenase {ECO:0000313|EMBL:GAO57017.1}; EC=1.3.8.6 {ECO:0000313|EMBL:GAO57017.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Acyl-CoA dehydrogenase domain protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=A4XEB8_NOVAD
acyl-CoA dehydrogenase domain-containing protein
2019_SCN_bioreactor_t3_biofilm_scaffold_39715_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3414..5171)
DNA (1758bp) protein (586aa)
Kef-type potassium/proton antiporter, CPA2 family n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G4U6_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO57016.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
sodium/hydrogen exchanger
2019_SCN_bioreactor_t3_biofilm_scaffold_39715_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5304..5681
DNA (378bp) protein (126aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZD87_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO57015.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_39715_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5720..6982
DNA (1263bp) protein (421aa)
Threonine dehydratase {ECO:0000313|EMBL:GAO57014.1}; EC=4.3.1.19 {ECO:0000313|EMBL:GAO57014.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
threonine dehydratase (EC:4.3.1.19)
L-threonine ammonia-lyase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9C8_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_39715_8
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7211..7849
DNA (639bp) protein (213aa)
Putative arginyl-tRNA--protein transferase {ECO:0000256|HAMAP-Rule:MF_00689, ECO:0000256|SAAS:SAAS00194293}; Short=Arginyltransferase {ECO:0000256|HAMAP-Rule:MF_00689};; Short=R-transferase {ECO:0000256|HAMAP-Rule:MF_00689};; EC=2.3.2.8 {ECO:0000256|HAMAP-Rule:MF_00689, ECO:0000256|SAAS:SAAS00194290};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
arginyl-tRNA-protein transferase (EC:2.3.2.8)
Putative arginyl-tRNA--protein transferase n=1 Tax=Erythrobacter sp. SD-21 RepID=A5PCD2_9SPHN
2019_SCN_bioreactor_t3_biofilm_scaffold_39715_9
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7918..10224
DNA (2307bp) protein (769aa)
Surface antigen (D15) n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9C6_NOVAD
Outer membrane protein assembly factor yaeT {ECO:0000313|EMBL:GAO57012.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
surface antigen (D15)
2019_SCN_bioreactor_t3_biofilm_scaffold_39715_10
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10224..13100
DNA (2877bp) protein (959aa)
hypothetical protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B6F094
Uncharacterized protein {ECO:0000313|EMBL:GAO57011.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_39715_11
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13045..14262
DNA (1218bp) protein (406aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9C5_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO57011.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_39715_12
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14326..15660
DNA (1335bp) protein (445aa)
glycosyl transferase family 1 n=1 Tax=Novosphingobium nitrogenifigens RepID=UPI000370ADBC
Glycosyltransferase {ECO:0000313|EMBL:GAO57010.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
glycosyltransferase
2019_SCN_bioreactor_t3_biofilm_scaffold_39715_13
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15888..17315)
DNA (1428bp) protein (476aa)
Aldehyde dehydrogenase {ECO:0000313|EMBL:GAO57009.1}; EC=1.2.1.3 {ECO:0000313|EMBL:GAO57009.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Aldehyde dehydrogenase n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZD79_9SPHN
aldehyde dehydrogenase
2019_SCN_bioreactor_t3_biofilm_scaffold_39715_14
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17481..19775
DNA (2295bp) protein (765aa)
Periplasmic sensor diguanylate cyclase/phosphodiesterase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9C2_NOVAD
Diguanylate cyclase/phosphodiesterase {ECO:0000313|EMBL:GAO57008.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
periplasmic sensor diguanylate cyclase/phosphodiesterase
2019_SCN_bioreactor_t3_biofilm_scaffold_39715_15
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19786..20277)
DNA (492bp) protein (164aa)
hypothetical protein n=1 Tax=Novosphingobium nitrogenifigens RepID=UPI0002D977D1
Uncharacterized protein {ECO:0000313|EMBL:GAO57007.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_39715_16
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20456..20956)
DNA (501bp) protein (167aa)
Glutamine synthetase type I {ECO:0000313|EMBL:GAO57006.1}; EC=6.3.1.2 {ECO:0000313|EMBL:GAO57006.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
glnA; glutamine synthetase (EC:6.3.1.2)
Glutamine synthetase n=2 Tax=Novosphingobium RepID=F6II79_9SPHN
Displaying 16 items

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