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2019_SCN_bioreactor_t3_biofilm_scaffold_40213

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t3_biofilm_scaffold_40213_1
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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122..868
DNA (747bp) protein (249aa)
energy transducer TonB n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B5503E
Ferric siderophore transport system, periplasmic binding protein tonB {ECO:0000313|EMBL:GAO53955.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_40213_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1032..1298
DNA (267bp) protein (89aa)
Putative uncharacterized protein n=2 Tax=Novosphingobium nitrogenifigens RepID=F1ZBD8_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO53956.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
surface antigen
2019_SCN_bioreactor_t3_biofilm_scaffold_40213_3
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1311..1823)
DNA (513bp) protein (171aa)
Transcriptional regulator, MarR family n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G8Y7_NOVAD
Transcriptional regulators {ECO:0000313|EMBL:GAO53957.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
MarR family transcriptional regulator
2019_SCN_bioreactor_t3_biofilm_scaffold_40213_4
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1865..2311)
DNA (447bp) protein (149aa)
hypothetical protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B47B45
Uncharacterized protein {ECO:0000313|EMBL:GAO53958.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_40213_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2353..2688)
DNA (336bp) protein (112aa)
hypothetical protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B6ABD1
Uncharacterized protein {ECO:0000313|EMBL:GAO53959.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_40213_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2763..3353)
DNA (591bp) protein (197aa)
hypothetical protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B68B85
DNA-binding HTH domain-containing proteins {ECO:0000313|EMBL:GAO53960.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
LuxR family transcriptional regulator
2019_SCN_bioreactor_t3_biofilm_scaffold_40213_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3642..5228
DNA (1587bp) protein (529aa)
Putative signal transduction histidine kinase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G8Z1_NOVAD
Two-component system sensor kinase {ECO:0000313|EMBL:GAO53961.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
signal transduction histidine kinase
2019_SCN_bioreactor_t3_biofilm_scaffold_40213_8
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5225..5848
DNA (624bp) protein (208aa)
Two component transcriptional regulator, LuxR family n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G8Z2_NOVAD
Two-component system regulatory protein {ECO:0000313|EMBL:GAO53962.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
two component LuxR family transcriptional regulator
2019_SCN_bioreactor_t3_biofilm_scaffold_40213_9
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5868..6170)
DNA (303bp) protein (101aa)
Uncharacterized protein {ECO:0000313|EMBL:GAO53963.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
2019_SCN_bioreactor_t3_biofilm_scaffold_40213_10
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6170..6373)
DNA (204bp) protein (68aa)
Uncharacterized protein {ECO:0000313|EMBL:GAO53963.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
2019_SCN_bioreactor_t3_biofilm_scaffold_40213_11
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6695..7102)
DNA (408bp) protein (136aa)
UvrABC system protein A n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G936_NOVAD
UvrABC system protein A {ECO:0000256|HAMAP-Rule:MF_00205, ECO:0000256|SAAS:SAAS00088996}; Short=UvrA protein {ECO:0000256|HAMAP-Rule:MF_00205};; Excinuclease ABC subunit A {ECO:0000256|HAMAP-Rule:MF_00205}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
uvrA; excinuclease ABC subunit A
2019_SCN_bioreactor_t3_biofilm_scaffold_40213_12
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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7908..8969
DNA (1062bp) protein (354aa)
Uncharacterized protein n=1 Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5P302_AROAE
hypothetical protein
Tax=GWC2_Gemmatimonadetes_71_10_curated
Displaying 12 items

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