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2019_SCN_bioreactor_t3_biofilm_scaffold_32047

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t3_biofilm_scaffold_32047_1
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..471)
DNA (471bp) protein (157aa)
Protein translocase subunit SecA n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=SECA_NOVAD
Protein translocase subunit SecA {ECO:0000256|HAMAP-Rule:MF_01382, ECO:0000256|RuleBase:RU003874}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
azi, div; preprotein translocase subunit SecA
2019_SCN_bioreactor_t3_biofilm_scaffold_32047_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(572..838)
DNA (267bp) protein (89aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G6U2_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO56003.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_32047_3
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(912..1415)
DNA (504bp) protein (168aa)
Energy transducer TonB n=1 Tax=Sphingobium lactosutens DS20 RepID=T0IQF8_9SPHN
Ferric siderophore transport system, periplasmic binding protein tonB {ECO:0000313|EMBL:GAO56002.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_32047_4
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1538..2536
DNA (999bp) protein (333aa)
argJ; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase (EC:2.3.1.1 2.3.1.35)
Arginine biosynthesis bifunctional protein ArgJ n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G6U1_NOVAD
Arginine biosynthesis bifunctional protein ArgJ {ECO:0000256|HAMAP-Rule:MF_01106}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
2019_SCN_bioreactor_t3_biofilm_scaffold_32047_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2685..3290
DNA (606bp) protein (202aa)
Glutathione S-transferase-like protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G6U0_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO56000.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
glutathione S-transferase-like protein
2019_SCN_bioreactor_t3_biofilm_scaffold_32047_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3287..3718
DNA (432bp) protein (144aa)
Glutathione-dependent formaldehyde-activating, GFA n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5V660_SPHWW
Gfa-like protein {ECO:0000313|EMBL:GAO55999.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
glutathione-dependent formaldehyde-activating protein
2019_SCN_bioreactor_t3_biofilm_scaffold_32047_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3715..4530
DNA (816bp) protein (272aa)
Inositol-1-monophosphatase {ECO:0000313|EMBL:GAO55998.1}; EC=3.1.3.25 {ECO:0000313|EMBL:GAO55998.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Inositol monophosphatase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G6T9_NOVAD
inositol monophosphatase
2019_SCN_bioreactor_t3_biofilm_scaffold_32047_8
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4656..4976)
DNA (321bp) protein (107aa)
thioredoxin n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B547F4
Thioredoxin {ECO:0000256|PIRNR:PIRNR000077}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
thioredoxin
2019_SCN_bioreactor_t3_biofilm_scaffold_32047_9
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5036..5383)
DNA (348bp) protein (116aa)
UvrD/REP helicase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G6T7_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO55996.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
UvrD/REP helicase
Displaying 9 items

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