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2019_SCN_bioreactor_t3_biofilm_scaffold_14051

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t3_biofilm_scaffold_14051_1
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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119..2275
DNA (2157bp) protein (719aa)
Phosphoribosylformylglycinamidine synthase subunit PurL {ECO:0000256|HAMAP-Rule:MF_00420}; Short=FGAM synthase {ECO:0000256|HAMAP-Rule:MF_00420};; EC=6.3.5.3 {ECO:0000256|HAMAP-Rule:MF_00420};; Formylglycinamide ribonucleotide amidotransferase subunit II {ECO:0000256|HAMAP-Rule:MF_00420}; Glutamine amidotransferase PurL {ECO:0000256|HAMAP-Rule:MF_00420}; Phosphoribosylformylglycinamidine synthase subunit II {ECO:0000256|HAMAP-Rule:MF_00420}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
phosphoribosylformylglycinamidine synthase II (EC:6.3.5.3)
phosphoribosylglycinamide synthetase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B3B82C
2019_SCN_bioreactor_t3_biofilm_scaffold_14051_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2312..2893)
DNA (582bp) protein (194aa)
hypothetical protein n=2 Tax=Sphingomonas melonis RepID=UPI00036C56C7
Uncharacterized protein {ECO:0000313|EMBL:GAO56497.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_14051_3
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2914..3747)
DNA (834bp) protein (278aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G629_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO56498.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_14051_4
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3839..4180
DNA (342bp) protein (114aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G628_NOVAD
Inner membrane protein {ECO:0000313|EMBL:GAO56499.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_14051_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4170..4994)
DNA (825bp) protein (275aa)
Phosphoserine phosphatase {ECO:0000313|EMBL:GAO56500.1}; EC=3.1.3.3 {ECO:0000313|EMBL:GAO56500.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
phosphoserine phosphatase (EC:3.1.3.3)
Phosphoserine phosphatase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G627_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_14051_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5047..6036
DNA (990bp) protein (330aa)
tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783}; EC=2.5.1.75 {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783};; Dimethylallyl diphosphate:tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; Isopentenyl-diphosphate:tRNA isopentenyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
tRNA dimethylallyltransferase n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z8V8_9SPHN
tRNA delta(2)-isopentenylpyrophosphate transferase
2019_SCN_bioreactor_t3_biofilm_scaffold_14051_7
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6022..7896)
DNA (1875bp) protein (625aa)
Uncharacterized protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V3L4_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ENN87686.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
2019_SCN_bioreactor_t3_biofilm_scaffold_14051_8
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8153..8668
DNA (516bp) protein (172aa)
Acetolactate synthase small subunit {ECO:0000313|EMBL:GAO56504.1}; EC=2.2.1.6 {ECO:0000313|EMBL:GAO56504.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
ilvH; acetolactate synthase 3 regulatory subunit (EC:2.2.1.6)
acetolactate synthase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B350D5
2019_SCN_bioreactor_t3_biofilm_scaffold_14051_9
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8819..9838
DNA (1020bp) protein (340aa)
Ketol-acid reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00435, ECO:0000256|SAAS:SAAS00051427}; EC=1.1.1.86 {ECO:0000256|HAMAP-Rule:MF_00435, ECO:0000256|SAAS:SAAS00051427};; Acetohydroxy-acid isomeroreductase {ECO:0000256|HAMAP-Rule:MF_00435}; Alpha-keto-beta-hydroxylacyl reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00435}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
ketol-acid reductoisomerase (EC:1.1.1.86)
Ketol-acid reductoisomerase n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6EXX8_SPHCR
2019_SCN_bioreactor_t3_biofilm_scaffold_14051_10
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10043..10432
DNA (390bp) protein (130aa)
hypothetical protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B3D575
Uncharacterized protein {ECO:0000313|EMBL:GAO56506.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_14051_11
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10451..11584)
DNA (1134bp) protein (378aa)
Epoxide hydrolase {ECO:0000313|EMBL:GAO56507.1}; EC=3.3.2.9 {ECO:0000313|EMBL:GAO56507.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Epoxide hydrolase-like protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G620_NOVAD
epoxide hydrolase-like protein
2019_SCN_bioreactor_t3_biofilm_scaffold_14051_12
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11840..12427
DNA (588bp) protein (196aa)
2-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_00572}; EC=2.3.3.13 {ECO:0000256|HAMAP-Rule:MF_00572};; Alpha-IPM synthase {ECO:0000256|HAMAP-Rule:MF_00572}; Alpha-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_00572}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
2-isopropylmalate synthase (EC:2.3.3.13)
2-isopropylmalate synthase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G619_NOVAD
Displaying 12 items

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