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2019_SCN_bioreactor_t3_biofilm_scaffold_14425

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t3_biofilm_scaffold_14425_1
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..571)
DNA (570bp) protein (190aa)
hypothetical protein n=2 Tax=Sphingobium xenophagum RepID=UPI00035F6651
L-proline/glycine betaine transporter proP {ECO:0000313|EMBL:GAO56869.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
major facilitator superfamily transmembrane transporter
2019_SCN_bioreactor_t3_biofilm_scaffold_14425_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(568..1788)
DNA (1221bp) protein (407aa)
Uncharacterized protein n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MQP1_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO56868.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_14425_3
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1832..2833)
DNA (1002bp) protein (334aa)
Methyltransferase n=1 Tax=Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) RepID=D5VKY0_CAUST
Uncharacterized protein {ECO:0000313|EMBL:GAO56866.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
methyltransferase
2019_SCN_bioreactor_t3_biofilm_scaffold_14425_4
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3064..5430)
DNA (2367bp) protein (789aa)
Broad-specificity glycerol dehydrogenase subunit sldA {ECO:0000313|EMBL:GAO56865.1}; EC=1.1.99.22 {ECO:0000313|EMBL:GAO56865.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
glucose dehydrogenase n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CA20D
glucose dehydrogenase
2019_SCN_bioreactor_t3_biofilm_scaffold_14425_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5938..6639
DNA (702bp) protein (234aa)
UPI0003D012B5 related cluster n=1 Tax=unknown RepID=UPI0003D012B5
DNA-binding response regulator {ECO:0000313|EMBL:GAO56864.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
winged helix family two component transcriptional regulator
2019_SCN_bioreactor_t3_biofilm_scaffold_14425_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6626..7978
DNA (1353bp) protein (451aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI00037C57D7
Peptidoglycan binding domain protein {ECO:0000313|EMBL:GAO56863.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
fecR family protein
2019_SCN_bioreactor_t3_biofilm_scaffold_14425_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7991..10162
DNA (2172bp) protein (724aa)
hypothetical protein n=1 Tax=Sphingomonas wittichii RepID=UPI0002D4264D
Signal transduction histidine kinase {ECO:0000313|EMBL:GAO56862.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
integral membrane sensor signal transduction histidine kinase
2019_SCN_bioreactor_t3_biofilm_scaffold_14425_8
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10171..10734)
DNA (564bp) protein (188aa)
Uncharacterized protein {ECO:0000313|EMBL:GAO56861.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
2019_SCN_bioreactor_t3_biofilm_scaffold_14425_9
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11053..11553
DNA (501bp) protein (167aa)
Transcriptional regulator, MarR family n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G8Y7_NOVAD
Transcriptional regulators {ECO:0000313|EMBL:GAO56860.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
MarR family transcriptional regulator
2019_SCN_bioreactor_t3_biofilm_scaffold_14425_10
unknown

Not on your lists

comp(11565..12287)
DNA (723bp) protein (241aa)

This feature has no annotations

2019_SCN_bioreactor_t3_biofilm_scaffold_14425_11
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12341..14236
DNA (1896bp) protein (632aa)
Diguanylate cyclase/phosphodiesterase with PAS/PAC and MHYT sensor n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EGZ6_9SPHN
Diguanylate cyclase/phosphodiesterase {ECO:0000313|EMBL:GAO56859.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
diguanylate cyclase
2019_SCN_bioreactor_t3_biofilm_scaffold_14425_12
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15118..22872
DNA (7755bp) protein (2585aa)
Outer membrane autotransporter barrel domain protein n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6F2E3_SPHCR
Outer membrane autotransporter barrel domain protein {ECO:0000313|EMBL:AEG50605.1}; TaxID=690566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum L-1.;"
outer membrane autotransporter barrel domain-containing protein
2019_SCN_bioreactor_t3_biofilm_scaffold_14425_13
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23233..24435)
DNA (1203bp) protein (401aa)
AraC family transcriptional regulator n=1 Tax=Sphingobium sp. HDIP04 RepID=T0GCN7_9SPHN
Short-chain dehydrogenase {ECO:0000313|EMBL:GAO56396.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
SDR-family protein
2019_SCN_bioreactor_t3_biofilm_scaffold_14425_14
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24448..24876)
DNA (429bp) protein (143aa)
Uncharacterized protein n=1 Tax=Cystobacter fuscus DSM 2262 RepID=S9P1G1_9DELT
Uncharacterized protein {ECO:0000313|EMBL:GAO56395.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_14425_15
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24967..25953
DNA (987bp) protein (329aa)
Hydrolase, alpha/beta fold family n=1 Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=Q09DY6_STIAD
Hydrolase of alpha/beta fold family {ECO:0000313|EMBL:GAO56394.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
alpha/beta hydrolase fold family protein
2019_SCN_bioreactor_t3_biofilm_scaffold_14425_16
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26100..26621)
DNA (522bp) protein (174aa)
HxlR family transcriptional regulator n=1 Tax=Bradyrhizobium japonicum RepID=UPI000361A07E
Transcriptional regulator of hxlR family {ECO:0000313|EMBL:GAO56392.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
HxlR family transcriptional regulator
2019_SCN_bioreactor_t3_biofilm_scaffold_14425_17
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26658..27263)
DNA (606bp) protein (202aa)
DSBA oxidoreductase n=1 Tax=Caulobacter sp. (strain K31) RepID=B0T9K2_CAUSK
2-hydroxychromene-2-carboxylate isomerase family protein, glutathione-dependent {ECO:0000313|EMBL:GAO56391.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
DSBA oxidoreductase
2019_SCN_bioreactor_t3_biofilm_scaffold_14425_18
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27263..28012)
DNA (750bp) protein (250aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=E0LPD4_SPHCR
Short-chain dehydrogenase of associated with 2-hydroxychromene-2-carboxylate isomerase family protein {ECO:0000313|EMBL:GAO56390.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
short-chain dehydrogenase/reductase SDR
2019_SCN_bioreactor_t3_biofilm_scaffold_14425_19
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28057..28752)
DNA (696bp) protein (232aa)
Short-chain alcohol dehydrogenase n=1 Tax=Bradyrhizobium sp. WSM1253 RepID=I2QDI6_9BRAD
Short-chain dehydrogenase of associated with 2-hydroxychromene-2-carboxylate isomerase family protein {ECO:0000313|EMBL:GAO56389.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
putative oxidoreductase, SDR family
2019_SCN_bioreactor_t3_biofilm_scaffold_14425_20
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28749..29330)
DNA (582bp) protein (194aa)
Putative 2-hydroxychromene-2-carboxylate isomerase n=2 Tax=Rhizobium leguminosarum RepID=Q52782_RHILV
2-hydroxychromene-2-carboxylate isomerase family protein, glutathione-dependent {ECO:0000313|EMBL:GAO56388.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
putative 2-hydroxychromene-2-carboxylate isomerase
2019_SCN_bioreactor_t3_biofilm_scaffold_14425_21
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29769..31340)
DNA (1572bp) protein (524aa)
Putative AMP-dependent synthetase and ligase {ECO:0000313|EMBL:EIK92762.1}; EC=6.2.1.3 {ECO:0000313|EMBL:EIK92762.1};; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
Putative AMP-dependent synthetase and ligase n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MU72_9BURK
long-chain-fatty-acid--CoA ligase
2019_SCN_bioreactor_t3_biofilm_scaffold_14425_22
BJP_IG2103_Dechloromonas_63_51, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31562..33307)
DNA (1746bp) protein (582aa)
Fis family transcriptional regulator n=1 Tax=Nevskia ramosa RepID=UPI0003B367D8
Fis family transcriptional regulator
Tax=BJP_IG2103_Dechloromonas_63_51
2019_SCN_bioreactor_t3_biofilm_scaffold_14425_23
Ralstonia sp. GA3-3, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33589..34491
DNA (903bp) protein (301aa)
Glyoxalase/bleomycin resistance protein/dioxygenase n=1 Tax=Ralstonia sp. GA3-3 RepID=R7XIL2_9RALS
Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:EON18895.1}; TaxID=1229514 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. GA3-3.;"
glyoxalase/bleomycin resistance protein/dioxygenase
2019_SCN_bioreactor_t3_biofilm_scaffold_14425_24
Sphingobium sp. YBL2, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34601..36730
DNA (2130bp) protein (710aa)
TonB-dependent receptor n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6EZ99_SPHCR
Uncharacterized protein {ECO:0000313|EMBL:AJR23764.1}; TaxID=484429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. YBL2.;"
TonB-dependent receptor
2019_SCN_bioreactor_t3_biofilm_scaffold_14425_25
Saccharomonospora glauca, Saccharomonospora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

36850..37704
DNA (855bp) protein (285aa)
bphD; 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (EC:3.7.1.8)
Putative hydrolase or acyltransferase of alpha/beta superfamily n=1 Tax=Saccharomonospora glauca K62 RepID=I1D2V6_9PSEU
Putative hydrolase or acyltransferase of alpha/beta superfamily {ECO:0000313|EMBL:EIE99280.1}; TaxID=928724 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharomonospora.;" source="Saccharomonospora glauca K62.;"
2019_SCN_bioreactor_t3_biofilm_scaffold_14425_26
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37821..39671
DNA (1851bp) protein (617aa)
tfdB; dichlorophenol hydroxylase (EC:1.14.13.20)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0GKE4_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB00503.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
2019_SCN_bioreactor_t3_biofilm_scaffold_14425_27
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

39739..40515
DNA (777bp) protein (259aa)
4-oxalocrotonate decarboxylase (EC:4.1.1.77)
4-oxalocrotonate decarboxylase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W825_9SPHN
4-oxalocrotonate decarboxylase {ECO:0000313|EMBL:ENY79873.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
2019_SCN_bioreactor_t3_biofilm_scaffold_14425_28
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

40520..41179
DNA (660bp) protein (220aa)
Acetaldehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01657, ECO:0000256|SAAS:SAAS00042164}; EC=1.2.1.10 {ECO:0000256|HAMAP-Rule:MF_01657, ECO:0000256|SAAS:SAAS00042125};; Acetaldehyde dehydrogenase [acetylating] {ECO:0000256|HAMAP-Rule:MF_01657}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
acetaldehyde dehydrogenase (EC:1.2.1.10)
Acetaldehyde dehydrogenase n=2 Tax=Novosphingobium nitrogenifigens RepID=F1ZD17_9SPHN
Displaying 28 items

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