name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
2019_SCN_bioreactor_t3_biofilm_scaffold_14637_1
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(3..593)
|
DedA n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G6K4_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO55912.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
|
|
2019_SCN_bioreactor_t3_biofilm_scaffold_14637_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(641..1591)
|
Glutathione synthetase {ECO:0000256|HAMAP-Rule:MF_00162}; EC=6.3.2.3 {ECO:0000256|HAMAP-Rule:MF_00162};; GSH synthetase {ECO:0000256|HAMAP-Rule:MF_00162}; Glutathione synthase {ECO:0000256|HAMAP-Rule:MF_00162}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
glutathione synthetase (EC:6.3.2.3)
glutathione synthetase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B39810
|
|
2019_SCN_bioreactor_t3_biofilm_scaffold_14637_3
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(1617..1979)
|
hypothetical protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B432B2
UPF0102 protein NMD1_03062 {ECO:0000256|HAMAP-Rule:MF_00048}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
|
|
2019_SCN_bioreactor_t3_biofilm_scaffold_14637_4
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(1976..2815)
|
Ribosomal RNA small subunit methyltransferase I {ECO:0000256|HAMAP-Rule:MF_01877}; EC=2.1.1.198 {ECO:0000256|HAMAP-Rule:MF_01877};; 16S rRNA 2'-O-ribose C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01877}; rRNA (cytidine-2'-O-)-methyltransferase RsmI {ECO:0000256|HAMAP-Rule:MF_01877}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Ribosomal RNA small subunit methyltransferase I n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G6K0_NOVAD
hypothetical protein
|
|
2019_SCN_bioreactor_t3_biofilm_scaffold_14637_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
2887..4020
|
Amino acid/amide ABC transporter substrate-binding protein, HAAT family n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G6J9_NOVAD
ABC-type branched-chain amino acid transport systems, periplasmic component {ECO:0000313|EMBL:GAO55908.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
extracellular ligand-binding receptor
|
|
2019_SCN_bioreactor_t3_biofilm_scaffold_14637_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
4147..6156
|
DNA topoisomerase 4 subunit B {ECO:0000256|HAMAP-Rule:MF_00938}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_00938};; Topoisomerase IV subunit B {ECO:0000256|HAMAP-Rule:MF_00938}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
DNA topoisomerase IV subunit B (EC:5.99.1.3)
DNA topoisomerase 4 subunit B n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G6J8_NOVAD
|
|
2019_SCN_bioreactor_t3_biofilm_scaffold_14637_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
6293..6676
|
Uncharacterized protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8VW22_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO55906.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
|
|
2019_SCN_bioreactor_t3_biofilm_scaffold_14637_8
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(6737..7429)
|
hypothetical protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B361D7
Uncharacterized protein {ECO:0000313|EMBL:GAO55904.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
|
|
2019_SCN_bioreactor_t3_biofilm_scaffold_14637_9
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
7762..8538
|
ATPase AAA n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z9E1_9SPHN
ATPase associated with various cellular activities, AAA_5 {ECO:0000313|EMBL:GAO55903.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
ATPase
|
|
2019_SCN_bioreactor_t3_biofilm_scaffold_14637_10
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(8662..9402)
|
Glutathione S-transferase-like protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G6J3_NOVAD
Glutathione S-transferase {ECO:0000313|EMBL:GAO55900.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
glutathione S-transferase-like protein
|
|
2019_SCN_bioreactor_t3_biofilm_scaffold_14637_11
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
9497..9937
|
Glutathione-dependent formaldehyde-activating, GFA n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G6J2_NOVAD
Gfa-like protein {ECO:0000313|EMBL:GAO55899.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
glutathione-dependent formaldehyde-activating protein
|
|
2019_SCN_bioreactor_t3_biofilm_scaffold_14637_12
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
9941..11122
|
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G6J1_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO55898.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
|
|
2019_SCN_bioreactor_t3_biofilm_scaffold_14637_13
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(11156..12358)
|
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G6I6_NOVAD
Alternate gene name: yzbB {ECO:0000313|EMBL:GAO55897.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
|
|
2019_SCN_bioreactor_t3_biofilm_scaffold_14637_14
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(12355..12897)
|
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G6I5_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO55896.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
|
|
2019_SCN_bioreactor_t3_biofilm_scaffold_14637_15
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
12943..14172
|
Tyrosine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00009759}; EC=6.1.1.1 {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00009778};; Tyrosyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02006}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
tyrosyl-tRNA synthetase (EC:6.1.1.1)
Tyrosine--tRNA ligase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=SYY_NOVAD
|
|
2019_SCN_bioreactor_t3_biofilm_scaffold_14637_16
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
14396..14596
|
Putative uncharacterized protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z9D4_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO55894.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
|
|
2019_SCN_bioreactor_t3_biofilm_scaffold_14637_17
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
14707..16839
|
TonB-denpendent receptor n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0I0N1_9SPHN
Zinc-regulated outer membrane receptor {ECO:0000313|EMBL:GAO55892.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
TonB-dependent receptor
|
|
2019_SCN_bioreactor_t3_biofilm_scaffold_14637_18
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
16896..18233
|
Major facilitator superfamily MFS_1 n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G6I2_NOVAD
Permeases of the major facilitator superfamily {ECO:0000313|EMBL:GAO55891.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
major facilitator transporter
|
|
2019_SCN_bioreactor_t3_biofilm_scaffold_14637_19
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
18237..19052
|
Cysteine synthase {ECO:0000313|EMBL:GAO55890.1}; EC=2.5.1.47 {ECO:0000313|EMBL:GAO55890.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
cysteine synthase n=1 Tax=Sphingopyxis baekryungensis RepID=UPI0003B6E82D
cysteine synthase
|
|
2019_SCN_bioreactor_t3_biofilm_scaffold_14637_20
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
19057..19776
|
Dienelactone hydrolase-like enzyme n=1 Tax=Novosphingobium sp. AP12 RepID=J2GTJ7_9SPHN
Dienelactone hydrolase family protein {ECO:0000313|EMBL:GAO55889.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
dienelactone hydrolase
|
|
2019_SCN_bioreactor_t3_biofilm_scaffold_14637_21
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
20031..21599
|
TonB-dependent receptor n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GX67_SPHAL
TonB-dependent receptor {ECO:0000313|EMBL:GAO55888.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
TonB-dependent receptor
|
|
2019_SCN_bioreactor_t3_biofilm_scaffold_14637_22
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
21677..22153
|
TonB-dependent receptor n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GX67_SPHAL
TonB-dependent receptor {ECO:0000313|EMBL:GAO55888.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
TonB-dependent receptor
|
|
2019_SCN_bioreactor_t3_biofilm_scaffold_14637_23
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
22158..23207
|
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002EC62E8
Uncharacterized protein {ECO:0000313|EMBL:GAO55887.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
PepSY-associated TM helix family protein
|
|
2019_SCN_bioreactor_t3_biofilm_scaffold_14637_24
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(23204..23845)
|
3-oxoadipate CoA-transferase subunit B {ECO:0000313|EMBL:GAO55886.1}; EC=2.8.3.6 {ECO:0000313|EMBL:GAO55886.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
butyryl-CoA:acetate CoA transferase (EC:2.8.3.8)
Butyryl-CoA:acetate CoA transferase n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VEG1_SPHWW
|
|
2019_SCN_bioreactor_t3_biofilm_scaffold_14637_25
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(23862..24578)
|
3-oxoadipate CoA-transferase subunit A {ECO:0000313|EMBL:GAO55885.1}; EC=2.8.3.6 {ECO:0000313|EMBL:GAO55885.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
3-oxoacid CoA-transferase subunit A (EC:2.8.3.5)
3-oxoacid CoA-transferase, A subunit n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VEG2_SPHWW
|
|
2019_SCN_bioreactor_t3_biofilm_scaffold_14637_26
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
24671..25435
|
IclR family transcriptional regulator n=1 Tax=Sphingobium xenophagum RepID=UPI00036BA307
Pca regulon regulatory protein pcaR {ECO:0000313|EMBL:GAO55884.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
beta-ketoadipate pathway transcriptional regulator
|
|
2019_SCN_bioreactor_t3_biofilm_scaffold_14637_27
Sphingobium herbicidovorans, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(25850..26386)
|
integrase n=1 Tax=alpha proteobacterium LLX12A RepID=UPI00037D0EFB
Integrase {ECO:0000313|EMBL:KFG89572.1}; TaxID=1219045 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium herbicidovorans (strain ATCC 700291 / DSM 11019 / NBRC; 16415 / MH) (Sphingomonas herbicidovorans).;"
transposase
|
|
2019_SCN_bioreactor_t3_biofilm_scaffold_14637_28
Sphingomonas sp. NS2, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(26467..26745)
|
Transposase A1 n=4 Tax=Sphingomonadaceae RepID=A9ZLZ6_SPHMC
Transposase {ECO:0000313|EMBL:AJW29351.1}; TaxID=908605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. NS2.;"
transposase IS3/IS911 family protein
|
|
2019_SCN_bioreactor_t3_biofilm_scaffold_14637_29
Novosphingobium resinovorum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(26811..27074)
|
silP1; Silver exporting P-type ATPase (EC:3.6.3.53)
hypothetical protein n=1 Tax=alpha proteobacterium LLX12A RepID=UPI00037192AD
Heavy metal translocating P-type ATPase {ECO:0000313|EMBL:EZP81012.1}; TaxID=158500 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium resinovorum.;"
|
|
2019_SCN_bioreactor_t3_biofilm_scaffold_14637_30
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(27109..28878)
|
Oleate hydratase (EC:4.2.1.53)
Uncharacterized protein n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QQR4_BREDI
Uncharacterized protein {ECO:0000313|EMBL:AHE53655.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
|