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2019_SCN_bioreactor_t3_biofilm_scaffold_86537

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t3_biofilm_scaffold_86537_1
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..666)
DNA (666bp) protein (222aa)
RND efflux system, outer membrane lipoprotein, NodT n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G908_NOVAD
RND efflux system, outer membrane lipoprotein cmeC {ECO:0000313|EMBL:GAO53907.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
RND efflux system outer membrane lipoprotein NodT
2019_SCN_bioreactor_t3_biofilm_scaffold_86537_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(663..3791)
DNA (3129bp) protein (1043aa)
Hydrophobe/amphiphile efflux-1 HAE1 n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G909_NOVAD
RND efflux system, inner membrane transporter cmeB {ECO:0000313|EMBL:GAO53906.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hydrophobe/amphiphile efflux-1 protein
2019_SCN_bioreactor_t3_biofilm_scaffold_86537_3
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3797..4984)
DNA (1188bp) protein (396aa)
Secretion protein HlyD n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G910_NOVAD
RND efflux system, membrane fusion protein cmeA {ECO:0000313|EMBL:GAO53905.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
secretion protein HlyD
2019_SCN_bioreactor_t3_biofilm_scaffold_86537_4
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5293..5919)
DNA (627bp) protein (209aa)
twin-arginine translocation pathway signal protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B628AC
Uncharacterized protein {ECO:0000313|EMBL:GAO53904.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
twin-arginine translocation pathway signal protein
2019_SCN_bioreactor_t3_biofilm_scaffold_86537_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6084..6671)
DNA (588bp) protein (196aa)
Nitroreductase n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z8I8_9SPHN
Nitroreductase family protein {ECO:0000313|EMBL:GAO53903.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
putative nitroreductase
2019_SCN_bioreactor_t3_biofilm_scaffold_86537_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6766..7179)
DNA (414bp) protein (138aa)
DoxX family protein n=2 Tax=Pseudomonas protegens RepID=Q4KE54_PSEF5
Uncharacterized protein {ECO:0000313|EMBL:GAO53902.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
DoxX family protein
2019_SCN_bioreactor_t3_biofilm_scaffold_86537_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7221..7919)
DNA (699bp) protein (233aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8VGT8_9SPHN
Pirin {ECO:0000313|EMBL:GAO53901.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
pirin
2019_SCN_bioreactor_t3_biofilm_scaffold_86537_8
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8026..8946
DNA (921bp) protein (307aa)
LysR family transcriptional regulator n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B409CF
Transcriptional regulator {ECO:0000313|EMBL:GAO53900.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
LysR family transcriptional regulator
2019_SCN_bioreactor_t3_biofilm_scaffold_86537_9
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9049..9933
DNA (885bp) protein (295aa)
TonB-dependent receptor n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=A4XEM4_NOVAD
TonB-dependent receptor {ECO:0000313|EMBL:GAO53899.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
TonB-dependent receptor
Displaying 9 items

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