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2019_SCN_bioreactor_t3_biofilm_scaffold_52629

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t3_biofilm_scaffold_52629_1
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..184)
DNA (183bp) protein (61aa)
Enoyl-CoA hydratase {ECO:0000313|EMBL:GAO54201.1}; EC=4.2.1.17 {ECO:0000313|EMBL:GAO54201.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI000382D321
enoyl-CoA hydratase/isomerase
2019_SCN_bioreactor_t3_biofilm_scaffold_52629_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(181..1254)
DNA (1074bp) protein (358aa)
aminoglycoside phosphotransferase n=1 Tax=Sphingomonas melonis RepID=UPI00036F3E58
Uncharacterized protein {ECO:0000313|EMBL:GAO54202.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
aminoglycoside phosphotransferase
2019_SCN_bioreactor_t3_biofilm_scaffold_52629_3
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1244..2431)
DNA (1188bp) protein (396aa)
Butyryl-CoA dehydrogenase {ECO:0000313|EMBL:GAO54203.1}; EC=1.3.8.1 {ECO:0000313|EMBL:GAO54203.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
butyryl-CoA dehydrogenase (EC:1.3.8.1)
acyl-CoA dehydrogenase n=1 Tax=Porphyrobacter sp. AAP82 RepID=UPI000314A228
2019_SCN_bioreactor_t3_biofilm_scaffold_52629_4
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2456..3220)
DNA (765bp) protein (255aa)
3-hydroxy-2-methylbutyryl-CoA dehydrogenase (EC:1.1.1.178)
3-hydroxy-2-methylbutyryl-CoA dehydrogenase n=1 Tax=Sphingobium quisquiliarum P25 RepID=T0HR67_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO54204.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
2019_SCN_bioreactor_t3_biofilm_scaffold_52629_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3254..4393)
DNA (1140bp) protein (380aa)
Butyryl-CoA dehydrogenase {ECO:0000313|EMBL:GAO54205.1}; EC=1.3.8.1 {ECO:0000313|EMBL:GAO54205.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
butyryl-CoA dehydrogenase (EC:1.3.8.1)
Butyryl-CoA dehydrogenase n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6EUI3_SPHCR
2019_SCN_bioreactor_t3_biofilm_scaffold_52629_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4420..5031
DNA (612bp) protein (204aa)
TetR family transcriptional regulator n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B31519
Transcriptional regulator of tetR family {ECO:0000313|EMBL:GAO54206.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
TetR family transcriptional regulator
2019_SCN_bioreactor_t3_biofilm_scaffold_52629_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5151..6317
DNA (1167bp) protein (389aa)
Alcohol dehydrogenase {ECO:0000313|EMBL:GAO54208.1}; EC=1.1.1.1 {ECO:0000313|EMBL:GAO54208.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Iron-containing alcohol dehydrogenase n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GWE1_SPHAL
iron-containing alcohol dehydrogenase
2019_SCN_bioreactor_t3_biofilm_scaffold_52629_8
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6331..6846)
DNA (516bp) protein (172aa)
Ribosomal RNA large subunit methyltransferase E {ECO:0000256|HAMAP-Rule:MF_01547}; EC=2.1.1.166 {ECO:0000256|HAMAP-Rule:MF_01547};; 23S rRNA Um2552 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01547}; rRNA (uridine-2'-O-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01547}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
23S rRNA methyltransferase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B62C0E
ribosomal RNA methyltransferase RrmJ/FtsJ
2019_SCN_bioreactor_t3_biofilm_scaffold_52629_9
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7084..8373)
DNA (1290bp) protein (430aa)
Ppx/GppA phosphatase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GB52_NOVAD
Phosphatase of Ppx/gppA family {ECO:0000313|EMBL:GAO54210.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Ppx/GppA phosphatase
2019_SCN_bioreactor_t3_biofilm_scaffold_52629_10
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9065..9955)
DNA (891bp) protein (297aa)
Cytochrome c, class I n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GB57_NOVAD
Cytochrome c2 {ECO:0000313|EMBL:GAO54225.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
cytochrome C
2019_SCN_bioreactor_t3_biofilm_scaffold_52629_11
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10182..11072
DNA (891bp) protein (297aa)
Prephenate dehydratase {ECO:0000313|EMBL:GAO54227.1}; EC=4.2.1.51 {ECO:0000313|EMBL:GAO54227.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
prephenate dehydratase (EC:4.2.1.51)
Prephenate dehydratase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GB58_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_52629_12
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11245..11874
DNA (630bp) protein (210aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GB59_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO54228.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_52629_13
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11871..13148
DNA (1278bp) protein (426aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GB60_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO54229.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_52629_14
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13145..14122
DNA (978bp) protein (326aa)
ATPase AAA_3 n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GB61_NOVAD
ATPase {ECO:0000313|EMBL:KHS43350.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
ATPase
2019_SCN_bioreactor_t3_biofilm_scaffold_52629_15
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14119..14283
DNA (165bp) protein (55aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZV20_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KHS43349.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
hypothetical protein
Displaying 15 items

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