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2019_SCN_bioreactor_t3_biofilm_scaffold_53443

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t3_biofilm_scaffold_53443_1
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..788)
DNA (786bp) protein (262aa)
Extracellular solute-binding protein, family 5 n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G3N9_NOVAD
Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein oppA {ECO:0000313|EMBL:GAO54966.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
extracellular solute-binding protein
2019_SCN_bioreactor_t3_biofilm_scaffold_53443_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(891..1274)
DNA (384bp) protein (128aa)
pilus protein PilZ n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B66DBA
Uncharacterized protein {ECO:0000313|EMBL:GAO54965.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_53443_3
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1487..1879)
DNA (393bp) protein (131aa)
molecular chaperone DnaK n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B5CE59
RNA polymerase-binding transcription factor DksA {ECO:0000256|HAMAP-Rule:MF_00926}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
TraR/DksA family transcriptional regulator
2019_SCN_bioreactor_t3_biofilm_scaffold_53443_4
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2185..2538
DNA (354bp) protein (118aa)
Sel1-like repeat protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G3N6_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO54963.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Sel1 repeat-containing protein
2019_SCN_bioreactor_t3_biofilm_scaffold_53443_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2581..3711)
DNA (1131bp) protein (377aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G3N5_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO54962.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_53443_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3708..4484)
DNA (777bp) protein (259aa)
Glycerophosphoryl diester phosphodiesterase {ECO:0000313|EMBL:GAO54961.1}; EC=3.1.4.46 {ECO:0000313|EMBL:GAO54961.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Glycerophosphoryl diester phosphodiesterase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G3N4_NOVAD
glycerophosphoryl diester phosphodiesterase
2019_SCN_bioreactor_t3_biofilm_scaffold_53443_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4456..4923)
DNA (468bp) protein (156aa)
Endoribonuclease L-PSP n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G3N3_NOVAD
Endoribonuclease L-PSP {ECO:0000313|EMBL:GAO54960.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
endoribonuclease L-PSP
2019_SCN_bioreactor_t3_biofilm_scaffold_53443_8
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4916..5545)
DNA (630bp) protein (210aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZDJ9_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO54959.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_53443_9
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5545..5772)
DNA (228bp) protein (76aa)
hypothetical protein n=1 Tax=Novosphingobium nitrogenifigens RepID=UPI0003758D46
Mlr0862 protein {ECO:0000313|EMBL:GAO54958.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_53443_10
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5884..6246
DNA (363bp) protein (121aa)
chemotaxis protein CheY n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B6201A
Chemotaxis protein cheV {ECO:0000313|EMBL:GAO54957.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
response regulator receiver protein
2019_SCN_bioreactor_t3_biofilm_scaffold_53443_11
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6257..6745)
DNA (489bp) protein (163aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G3M9_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO54956.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_53443_12
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7023..7262
DNA (240bp) protein (80aa)
phosphopantetheine-binding protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B5EA75
Uncharacterized protein {ECO:0000313|EMBL:GAO54955.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
Displaying 12 items

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