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2019_SCN_bioreactor_t3_biofilm_scaffold_9302

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t3_biofilm_scaffold_9302_1
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..157)
DNA (156bp) protein (52aa)
Acetyl-CoA acetyltransferase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W8E8_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO55416.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
acetyl-CoA acetyltransferase
2019_SCN_bioreactor_t3_biofilm_scaffold_9302_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

329..1552
DNA (1224bp) protein (408aa)
Peptidase M20D, amidohydrolase {ECO:0000313|EMBL:GAO55417.1}; EC=3.5.1.32 {ECO:0000313|EMBL:GAO55417.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
peptidase M20D, amidohydrolase (EC:3.5.1.32)
Peptidase M20D, amidohydrolase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G5T8_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_9302_3
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1549..1983
DNA (435bp) protein (145aa)
Phenylacetic acid degradation-related protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G5T9_NOVAD
Phenylacetic acid degradation-related protein {ECO:0000313|EMBL:GAO55418.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
phenylacetic acid degradation-like protein
2019_SCN_bioreactor_t3_biofilm_scaffold_9302_4
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2083..2547
DNA (465bp) protein (155aa)
response regulator receiver n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B68E18
Uncharacterized protein {ECO:0000313|EMBL:GAO55419.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
response regulator receiver domain-containing protein
2019_SCN_bioreactor_t3_biofilm_scaffold_9302_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2614..3405
DNA (792bp) protein (264aa)
Protein tyrosine/serine phosphatase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G5U2_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO55420.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
protein tyrosine/serine phosphatase
2019_SCN_bioreactor_t3_biofilm_scaffold_9302_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3532..4503
DNA (972bp) protein (324aa)
Thioredoxin reductase {ECO:0000313|EMBL:GAO55421.1}; EC=1.8.1.9 {ECO:0000313|EMBL:GAO55421.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Thioredoxin reductase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G5U3_NOVAD
thioredoxin reductase
2019_SCN_bioreactor_t3_biofilm_scaffold_9302_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4500..4976)
DNA (477bp) protein (159aa)
Esterase/lipase/thioesterase family active site n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G5U4_NOVAD
Esterase/lipase/thioesterase family {ECO:0000313|EMBL:GAO55422.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
esterase/lipase/thioesterase
2019_SCN_bioreactor_t3_biofilm_scaffold_9302_8
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5032..5217)
DNA (186bp) protein (62aa)
Esterase/lipase/thioesterase family active site n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G5U4_NOVAD
Esterase/lipase/thioesterase family {ECO:0000313|EMBL:GAO55422.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
esterase/lipase/thioesterase
2019_SCN_bioreactor_t3_biofilm_scaffold_9302_9
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5214..5885)
DNA (672bp) protein (224aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G5U5_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO55423.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_9302_10
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5891..6166)
DNA (276bp) protein (92aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G5U6_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO55424.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_9302_11
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6236..7237)
DNA (1002bp) protein (334aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G5U7_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO55425.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_9302_12
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7274..8812
DNA (1539bp) protein (513aa)
Long-chain-fatty-acid--CoA ligase {ECO:0000313|EMBL:GAO55426.1}; EC=6.2.1.3 {ECO:0000313|EMBL:GAO55426.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
AMP-dependent synthetase and ligase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G5U8_NOVAD
AMP-dependent synthetase/ligase
2019_SCN_bioreactor_t3_biofilm_scaffold_9302_13
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8809..10035
DNA (1227bp) protein (409aa)
Diaminopimelate decarboxylase {ECO:0000313|EMBL:GAO55427.1}; EC=4.1.1.20 {ECO:0000313|EMBL:GAO55427.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Orn/DAP/Arg decarboxylase 2 n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G5U9_NOVAD
Orn/DAP/Arg decarboxylase 2
2019_SCN_bioreactor_t3_biofilm_scaffold_9302_14
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10246..10893
DNA (648bp) protein (216aa)
Polysaccharide export protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G5V0_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO55428.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
polysaccharide export protein
2019_SCN_bioreactor_t3_biofilm_scaffold_9302_15
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10925..12445
DNA (1521bp) protein (507aa)
chain-length determining protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B3BF1B
Lipopolysaccharide biosynthesis chain length determinant protein {ECO:0000313|EMBL:GAO55429.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
lipopolysaccharide biosynthesis protein
2019_SCN_bioreactor_t3_biofilm_scaffold_9302_16
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12715..13383
DNA (669bp) protein (223aa)
Protein-tyrosine kinase {ECO:0000313|EMBL:GAO55430.1}; EC=2.7.10.- {ECO:0000313|EMBL:GAO55430.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
capsular polysaccharide biosynthesis protein, partial n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B34667
exopolysaccharide biosynthesis protein
2019_SCN_bioreactor_t3_biofilm_scaffold_9302_17
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13386..15119
DNA (1734bp) protein (578aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G5V3_NOVAD
Glycine-rich cell wall structural protein {ECO:0000313|EMBL:GAO55431.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_9302_18
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15136..16380
DNA (1245bp) protein (415aa)
ATPase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G5V4_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO55432.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
ATPase
2019_SCN_bioreactor_t3_biofilm_scaffold_9302_19
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16391..17317
DNA (927bp) protein (309aa)
Polysaccharide deacetylase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G5V5_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO55433.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
polysaccharide deacetylase
2019_SCN_bioreactor_t3_biofilm_scaffold_9302_20
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17314..18375
DNA (1062bp) protein (354aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G5V6_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO55434.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_9302_21
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18387..19523
DNA (1137bp) protein (379aa)
Glycosyl transferase, group 1 n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G5V7_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO55435.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
group 1 glycosyl transferase
Displaying 21 items

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