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2019_SCN_bioreactor_t3_biofilm_scaffold_57493

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Displaying items 1-30 of 34 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t3_biofilm_scaffold_57493_1
RBG_19FT_COMBO_Chloroflexi_62_14_curated, Chloroflexi, Bacteria

Not on your lists

comp(214..717)
DNA (504bp) protein (168aa)
hypothetical protein
TetR family transcriptional regulator id=1245450 bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
Tax=RBG_19FT_COMBO_Chloroflexi_62_14_curated
2019_SCN_bioreactor_t3_biofilm_scaffold_57493_2
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1012..1422
DNA (411bp) protein (137aa)
3-ketoacyl-CoA thiolase @ Acetyl-CoA acetyltransferase {ECO:0000313|EMBL:CCW19827.1}; EC=2.3.1.16 {ECO:0000313|EMBL:CCW19827.1};; EC=2.3.1.9 {ECO:0000313|EMBL:CCW19827.1};; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
acetyl-CoA acetyltransferase (EC:2.3.1.16)
acetyl-CoA acetyltransferase n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248B8E5
2019_SCN_bioreactor_t3_biofilm_scaffold_57493_3
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1480..2490)
DNA (1011bp) protein (337aa)
Transcriptional regulator, AraC family n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G537_NOVAD
Transcriptional regulator of araC family {ECO:0000313|EMBL:GAO53210.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
AraC family transcriptional regulator
2019_SCN_bioreactor_t3_biofilm_scaffold_57493_4
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2695..4395
DNA (1701bp) protein (567aa)
Amidohydrolase-like protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9H4_NOVAD
Exoenzymes regulatory protein aepA {ECO:0000313|EMBL:GAO53209.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
amidohydrolase-like protein
2019_SCN_bioreactor_t3_biofilm_scaffold_57493_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4392..5504
DNA (1113bp) protein (371aa)
Histone deacetylase superfamily n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VBC8_SPHWW
Deacetylases, including yeast histone deacetylase and acetoin utilization protein {ECO:0000313|EMBL:GAO53208.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
histone deacetylase superfamily protein
2019_SCN_bioreactor_t3_biofilm_scaffold_57493_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5656..6663
DNA (1008bp) protein (336aa)
LacI family transcriptional regulator n=1 Tax=Sphingomonas echinoides RepID=UPI00026C9361
Transcriptional regulator of lacI family {ECO:0000313|EMBL:GAO53200.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
LacI family transcription regulator
2019_SCN_bioreactor_t3_biofilm_scaffold_57493_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6752..7993
DNA (1242bp) protein (414aa)
MFS transporter n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI0003786C19
Hexuronate transporter {ECO:0000313|EMBL:GAO53199.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
major facilitator superfamily transporter
2019_SCN_bioreactor_t3_biofilm_scaffold_57493_8
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8024..9349)
DNA (1326bp) protein (442aa)
Sugar phosphate permease n=1 Tax=Caulobacter sp. AP07 RepID=J3AR97_9CAUL
Nitrate/nitrite transporter {ECO:0000313|EMBL:GAO53198.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
major facilitator family transporter
2019_SCN_bioreactor_t3_biofilm_scaffold_57493_9
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9423..10262
DNA (840bp) protein (280aa)
Uncharacterized protein n=1 Tax=Pseudomonas fluorescens (strain SBW25) RepID=C3K989_PSEFS
Uncharacterized protein {ECO:0000313|EMBL:GAO53197.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_57493_10
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10284..11714)
DNA (1431bp) protein (477aa)
Glycerol kinase {ECO:0000313|EMBL:GAO53196.1}; EC=2.7.1.30 {ECO:0000313|EMBL:GAO53196.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
glycerol kinase n=1 Tax=Methyloversatilis universalis RepID=UPI0003741803
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_57493_11
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11707..13110)
DNA (1404bp) protein (468aa)
Alkyldihydroxyacetonephosphate synthase {ECO:0000313|EMBL:GAO53195.1}; EC=2.5.1.26 {ECO:0000313|EMBL:GAO53195.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Alkylglycerone-phosphate synthase n=1 Tax=gamma proteobacterium IMCC3088 RepID=F3L1Z9_9GAMM
Alkylglycerone-phosphate synthase
2019_SCN_bioreactor_t3_biofilm_scaffold_57493_12
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13150..14730)
DNA (1581bp) protein (527aa)
Glycerol-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361217}; EC=1.1.5.3 {ECO:0000256|RuleBase:RU361217};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Glycerol-3-phosphate dehydrogenase n=1 Tax=gamma proteobacterium IMCC3088 RepID=F3L200_9GAMM
glycerol-3-phosphate dehydrogenase
2019_SCN_bioreactor_t3_biofilm_scaffold_57493_13
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14798..15682
DNA (885bp) protein (295aa)
LysR family transcriptional regulator n=1 Tax=Alcanivorax hongdengensis A-11-3 RepID=L0WDL7_9GAMM
Transcriptional regulator of lysR family {ECO:0000313|EMBL:GAO53193.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
sdsB; SDS degradation transcriptional activation protein
2019_SCN_bioreactor_t3_biofilm_scaffold_57493_14
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15679..17580)
DNA (1902bp) protein (634aa)
hypothetical protein n=1 Tax=Sandarakinorhabdus sp. AAP62 RepID=UPI00037B14EB
Uncharacterized protein {ECO:0000313|EMBL:GAO53192.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_57493_15
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17661..18149)
DNA (489bp) protein (163aa)
Transcriptional regulator, MarR family n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5V492_SPHWW
Transcriptional regulator of marR family {ECO:0000313|EMBL:GAO53191.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
MarR family transcriptional regulator
2019_SCN_bioreactor_t3_biofilm_scaffold_57493_16
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18158..18847)
DNA (690bp) protein (230aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0G6Y1_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO53190.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_57493_17
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18936..19679)
DNA (744bp) protein (248aa)
3-oxoacyl-[acyl-carrier protein] reductase {ECO:0000313|EMBL:GAO53189.1}; EC=1.1.1.100 {ECO:0000313|EMBL:GAO53189.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Short-chain dehydrogenase/reductase SDR n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5V491_SPHWW
short-chain dehydrogenase/reductase SDR
2019_SCN_bioreactor_t3_biofilm_scaffold_57493_18
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19676..20170)
DNA (495bp) protein (165aa)
aromatic-ring-hydroxylating dioxygenase subunit beta n=1 Tax=Sphingobium xenophagum RepID=UPI0003612000
Aromatic-ring-hydroxylating dioxygenase, beta subunit {ECO:0000313|EMBL:GAO53188.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
aromatic-ring-hydroxylating dioxygenase subunit beta
2019_SCN_bioreactor_t3_biofilm_scaffold_57493_19
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20167..21420)
DNA (1254bp) protein (418aa)
Ring hydroxylating dioxygenase, alpha subunit/Rieske (2Fe-2S) protein {ECO:0000313|EMBL:GAO53187.1}; EC=1.14.12.18 {ECO:0000313|EMBL:GAO53187.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Rieske (2Fe-2S) domain-containing protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8VJE6_9SPHN
Rieske (2Fe-2S) domain-containing protein
2019_SCN_bioreactor_t3_biofilm_scaffold_57493_20
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21463..21822)
DNA (360bp) protein (120aa)
IacB protein n=1 Tax=Sphingomonas wittichii RepID=UPI0002DD1553
Uncharacterized protein {ECO:0000313|EMBL:GAO53186.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_57493_21
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21860..23017)
DNA (1158bp) protein (386aa)
Acyl-CoA dehydrogenase, type 2, C-terminal domain n=3 Tax=Sphingomonas wittichii RepID=A5V489_SPHWW
Pigment protein {ECO:0000313|EMBL:GAO53185.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
acyl-CoA dehydrogenase type 2
2019_SCN_bioreactor_t3_biofilm_scaffold_57493_22
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23017..24165)
DNA (1149bp) protein (383aa)
Amidase {ECO:0000313|EMBL:GAO53184.1}; EC=3.5.1.4 {ECO:0000313|EMBL:GAO53184.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Amidase n=1 Tax=Pseudomonas fluorescens BRIP34879 RepID=L7HIU1_PSEFL
amidase
2019_SCN_bioreactor_t3_biofilm_scaffold_57493_23
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24363..25844)
DNA (1482bp) protein (494aa)
flavin-containing monooxygenase (EC:1.14.13.8)
Putative flavin-containing monooxygenase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZXR0_9SPHN
Dimethylaniline monooxygenase {ECO:0000313|EMBL:GAO53183.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
2019_SCN_bioreactor_t3_biofilm_scaffold_57493_24
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26105..28507
DNA (2403bp) protein (801aa)
TonB-dependent receptor n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5V4Y2_SPHWW
Uncharacterized protein {ECO:0000313|EMBL:GAO53182.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
TonB-dependent receptor
2019_SCN_bioreactor_t3_biofilm_scaffold_57493_25
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28477..29307
DNA (831bp) protein (277aa)
3-oxoacyl-[acyl-carrier protein] reductase {ECO:0000313|EMBL:GAO53181.1}; EC=1.1.1.100 {ECO:0000313|EMBL:GAO53181.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Glucose 1-dehydrogenase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YA06_9SPHN
short chain dehydrogenase
2019_SCN_bioreactor_t3_biofilm_scaffold_57493_26
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29427..30515
DNA (1089bp) protein (363aa)
hypothetical protein n=1 Tax=Sphingomonas wittichii RepID=UPI00036F618B
BenABC operon transcriptional activator benR {ECO:0000313|EMBL:GAO53180.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
AraC family transcriptional regulator
2019_SCN_bioreactor_t3_biofilm_scaffold_57493_27
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30508..31308)
DNA (801bp) protein (267aa)
Beta-ketoadipate enol-lactone hydrolase {ECO:0000313|EMBL:GAO53179.1}; EC=3.1.1.24 {ECO:0000313|EMBL:GAO53179.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
3-oxoadipate enol-lactonase (EC:3.1.1.24)
3-oxoadipate enol-lactonase n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5V4X9_SPHWW
2019_SCN_bioreactor_t3_biofilm_scaffold_57493_28
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31397..32326)
DNA (930bp) protein (310aa)
Catechol 1,2-dioxygenase {ECO:0000313|EMBL:GAO53178.1}; EC=1.13.11.1 {ECO:0000313|EMBL:GAO53178.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Catechol 1,2-dioxygenase n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5V4X8_SPHWW
catechol 1,2-dioxygenase
2019_SCN_bioreactor_t3_biofilm_scaffold_57493_29
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32354..32644)
DNA (291bp) protein (97aa)
Muconolactone Delta-isomerase {ECO:0000256|PIRNR:PIRNR001486}; Short=MIase {ECO:0000256|PIRNR:PIRNR001486};; EC=5.3.3.4 {ECO:0000256|PIRNR:PIRNR001486};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
muconolactone delta-isomerase (EC:5.3.3.4)
Muconolactone Delta-isomerase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YN34_9SPHN
2019_SCN_bioreactor_t3_biofilm_scaffold_57493_30
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32647..33804)
DNA (1158bp) protein (386aa)
Muconate cycloisomerase {ECO:0000313|EMBL:GAO53176.1}; EC=5.5.1.1 {ECO:0000313|EMBL:GAO53176.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
muconate cycloisomerase (EC:5.5.1.1)
muconate cycloisomerase n=1 Tax=Sphingomonas wittichii RepID=UPI00037F0C5B
Displaying items 1-30 of 34 in total

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