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2019_SCN_bioreactor_t3_biofilm_scaffold_136937

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t3_biofilm_scaffold_136937_1
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..377)
DNA (375bp) protein (125aa)
Biotin carboxyl carrier protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G6K6_NOVAD
Biotin carboxyl carrier protein of acetyl-CoA carboxylase {ECO:0000313|EMBL:GAO55914.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
biotin carboxyl carrier protein
2019_SCN_bioreactor_t3_biofilm_scaffold_136937_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(517..954)
DNA (438bp) protein (146aa)
3-dehydroquinate dehydratase {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752}; Short=3-dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00169};; EC=4.2.1.10 {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752};; Type II DHQase {ECO:0000256|HAMAP-Rule:MF_00169}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
3-dehydroquinate dehydratase (EC:4.2.1.10)
3-dehydroquinate dehydratase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G6K7_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_136937_3
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1062..1475)
DNA (414bp) protein (138aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G6K9_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO55916.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_136937_4
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1698..3869
DNA (2172bp) protein (724aa)
Catalase-peroxidase {ECO:0000256|HAMAP-Rule:MF_01961, ECO:0000256|RuleBase:RU003451}; Short=CP {ECO:0000256|HAMAP-Rule:MF_01961};; EC=1.11.1.21 {ECO:0000256|HAMAP-Rule:MF_01961, ECO:0000256|RuleBase:RU003451};; Peroxidase/catalase {ECO:0000256|HAMAP-Rule:MF_01961}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Catalase-peroxidase n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TI17_TISMK
katG; catalase/peroxidase HPI
2019_SCN_bioreactor_t3_biofilm_scaffold_136937_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4263..4595
DNA (333bp) protein (111aa)
Protein translocase subunit yajC n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G6L0_NOVAD
Preprotein translocase subunit yajC {ECO:0000313|EMBL:GAO55919.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
protein translocase subunit yajC
2019_SCN_bioreactor_t3_biofilm_scaffold_136937_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4628..6220
DNA (1593bp) protein (531aa)
Protein translocase subunit SecD n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G6L1_NOVAD
Protein translocase subunit SecD {ECO:0000256|HAMAP-Rule:MF_01463}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
secD; preprotein translocase subunit SecD
2019_SCN_bioreactor_t3_biofilm_scaffold_136937_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6236..7213
DNA (978bp) protein (326aa)
preprotein translocase subunit SecF n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B69A1A
Protein-export membrane protein SecF {ECO:0000256|HAMAP-Rule:MF_01464}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
protein translocase subunit secF
2019_SCN_bioreactor_t3_biofilm_scaffold_136937_8
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7396..8607)
DNA (1212bp) protein (404aa)
Glycosyl transferase, group 1 n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G6L3_NOVAD
Glycosyltransferase {ECO:0000313|EMBL:GAO55922.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
group 1 glycosyl transferase
2019_SCN_bioreactor_t3_biofilm_scaffold_136937_9
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8604..9176)
DNA (573bp) protein (191aa)
Transcriptional regulator, XRE family n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G6L4_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO55923.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
XRE family transcriptional regulator
2019_SCN_bioreactor_t3_biofilm_scaffold_136937_10
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9285..9761
DNA (477bp) protein (159aa)
hypothetical protein n=1 Tax=Citromicrobium bathyomarinum RepID=UPI0001DD0702
Uncharacterized protein {ECO:0000313|EMBL:GAO55924.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_136937_11
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9855..10832
DNA (978bp) protein (326aa)
Tat pathway signal protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B64CBE
Uncharacterized protein {ECO:0000313|EMBL:GAO55925.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_136937_12
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10838..11398
DNA (561bp) protein (187aa)
Tat pathway signal protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B64CBE
Uncharacterized protein {ECO:0000313|EMBL:GAO55925.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_136937_13
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11427..13226)
DNA (1800bp) protein (600aa)
ABC transporter related protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G6L6_NOVAD
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:GAO55926.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
ABC transporter-like protein
2019_SCN_bioreactor_t3_biofilm_scaffold_136937_14
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13358..13657
DNA (300bp) protein (100aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G6L7_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO55927.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_136937_15
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13767..15752
DNA (1986bp) protein (662aa)
histidine kinase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B466A5
Signal transduction histidine kinase {ECO:0000313|EMBL:GAO55929.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
periplasmic sensor signal transduction histidine kinase
2019_SCN_bioreactor_t3_biofilm_scaffold_136937_16
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15788..16201)
DNA (414bp) protein (138aa)
Tyrosine recombinase XerC n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0JAF9_9SPHN
Tyrosine recombinase XerC {ECO:0000256|HAMAP-Rule:MF_01808}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
phage integrase
Displaying 16 items

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