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2019_SCN_bioreactor_t3_biofilm_scaffold_97738

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t3_biofilm_scaffold_97738_1
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..559
DNA (558bp) protein (186aa)
Low-specificity L-threonine aldolase {ECO:0000313|EMBL:GAO54174.1}; EC=4.1.2.48 {ECO:0000313|EMBL:GAO54174.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
L-threonine aldolase (EC:4.1.2.5)
L-threonine aldolase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G371_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_97738_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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556..1476
DNA (921bp) protein (307aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G370_NOVAD
Permease of the drug/metabolite transporter (DMT) superfamily {ECO:0000313|EMBL:GAO54175.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_97738_3
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1386..2255)
DNA (870bp) protein (290aa)
NAD-dependent epimerase/dehydratase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G369_NOVAD
NAD-dependent epimerase/dehydratase
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:ABD27704.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
2019_SCN_bioreactor_t3_biofilm_scaffold_97738_4
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2252..3565)
DNA (1314bp) protein (438aa)
STE24 endopeptidase (EC:3.4.24.84)
STE24 endopeptidase n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IFM9_9SPHN
Peptidase of M48 family {ECO:0000313|EMBL:GAO54176.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
2019_SCN_bioreactor_t3_biofilm_scaffold_97738_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3671..6331
DNA (2661bp) protein (887aa)
Membrane alanine aminopeptidase N {ECO:0000313|EMBL:GAO54177.1}; EC=3.4.11.2 {ECO:0000313|EMBL:GAO54177.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
aminopeptidase N n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B7805B
pepN; aminopeptidase
2019_SCN_bioreactor_t3_biofilm_scaffold_97738_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6333..7115
DNA (783bp) protein (261aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z5C6_9SPHN
Laccase domain protein {ECO:0000256|RuleBase:RU361274}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_97738_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7124..8407)
DNA (1284bp) protein (428aa)
Alpha-ketoglutarate MFS transporter KgtP n=1 Tax=Pseudomonas sp. M47T1 RepID=I4N9K4_9PSED
Alpha-ketoglutarate permease {ECO:0000313|EMBL:GAO54179.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
major facilitator superfamily metabolite/H(+) symporter
2019_SCN_bioreactor_t3_biofilm_scaffold_97738_8
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8492..8980)
DNA (489bp) protein (163aa)
hydrolase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B70135
Hydrolase of haloacid dehalogenase-like family {ECO:0000313|EMBL:GAO54180.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
HAD family hydrolase
2019_SCN_bioreactor_t3_biofilm_scaffold_97738_9
Sphingopyxis alaskensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9243..9368)
DNA (126bp) protein (42aa)
50S ribosomal protein L36 n=8 Tax=Sphingomonadaceae RepID=RL36_SPHAL
rpmJ; 50S ribosomal protein L36
50S ribosomal protein L36 {ECO:0000255|HAMAP-Rule:MF_00251}; TaxID=317655 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256); (Sphingomonas alaskensis).;"
2019_SCN_bioreactor_t3_biofilm_scaffold_97738_10
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9441..10445)
DNA (1005bp) protein (335aa)
UDP-glucose 4-epimerase {ECO:0000313|EMBL:GAO54182.1}; EC=5.1.3.2 {ECO:0000313|EMBL:GAO54182.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
UDP-galactose 4-epimerase (EC:5.1.3.2)
UDP-glucose 4-epimerase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B69F5D
2019_SCN_bioreactor_t3_biofilm_scaffold_97738_11
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10599..11345
DNA (747bp) protein (249aa)
hypothetical protein n=1 Tax=Novosphingobium nitrogenifigens RepID=UPI00035FDEAA
Uncharacterized protein {ECO:0000313|EMBL:GAO54183.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_97738_12
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11421..12017
DNA (597bp) protein (199aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G361_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO54184.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_97738_13
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12014..13168
DNA (1155bp) protein (385aa)
Peptidase M14, carboxypeptidase A n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G360_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO54185.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
peptidase M14, carboxypeptidase A
2019_SCN_bioreactor_t3_biofilm_scaffold_97738_14
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13225..13356
DNA (132bp) protein (44aa)
Uncharacterized protein {ECO:0000313|EMBL:GAO54186.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Displaying 14 items

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