ggKbase home page

2019_SCN_bioreactor_t3_biofilm_scaffold_105205

Search features with annotation key words

Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t3_biofilm_scaffold_105205_1
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..324
DNA (324bp) protein (108aa)
MotA/TolQ/ExbB proton channel n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z5A5_9SPHN
MotA/tolQ/exbB proton channel family protein {ECO:0000313|EMBL:GAO54131.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
flagellar motor protein MotA
2019_SCN_bioreactor_t3_biofilm_scaffold_105205_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

457..984
DNA (528bp) protein (176aa)
Biopolymer transport ExbD protein n=2 Tax=Novosphingobium nitrogenifigens RepID=F1Z5A6_9SPHN
Biopolymer transport exbD protein {ECO:0000313|EMBL:GAO54130.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
biopolymer transport ExbD protein
2019_SCN_bioreactor_t3_biofilm_scaffold_105205_3
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1039..1479
DNA (441bp) protein (147aa)
Outer membrane transport energization protein ExbD n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GCE7_NOVAD
Biopolymer transport protein exbD/tolR {ECO:0000313|EMBL:GAO54129.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
biopolymer transport protein ExbD/TolR
2019_SCN_bioreactor_t3_biofilm_scaffold_105205_4
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1683..4130)
DNA (2448bp) protein (816aa)
DEAD/DEAH box helicase-like protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G326_NOVAD
ATP-dependent helicase of DEAD/DEAH box family, associated with Flp pilus assembly {ECO:0000313|EMBL:GAO54128.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
DEAD/DEAH box helicase-like protein
2019_SCN_bioreactor_t3_biofilm_scaffold_105205_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4344..5747)
DNA (1404bp) protein (468aa)
Phosphomannomutase {ECO:0000313|EMBL:GAO54127.1}; EC=5.4.2.8 {ECO:0000313|EMBL:GAO54127.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
phosphomannomutase (EC:5.4.2.8)
Phosphomannomutase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G322_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_105205_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5788..6072)
DNA (285bp) protein (95aa)
Heat shock protein DnaJ-like protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G321_NOVAD
DnaJ-class molecular chaperone {ECO:0000313|EMBL:GAO54126.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
heat shock protein DnaJ-like protein
2019_SCN_bioreactor_t3_biofilm_scaffold_105205_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6069..6926)
DNA (858bp) protein (286aa)
ATPases involved in chromosome partitioning-like protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G320_NOVAD
ATPases {ECO:0000313|EMBL:GAO54125.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
chromosome partitioning ATPase-like
2019_SCN_bioreactor_t3_biofilm_scaffold_105205_8
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7339..7971
DNA (633bp) protein (211aa)
Pantothenate synthetase {ECO:0000256|HAMAP-Rule:MF_00158, ECO:0000256|SAAS:SAAS00247609}; Short=PS {ECO:0000256|HAMAP-Rule:MF_00158};; EC=6.3.2.1 {ECO:0000256|HAMAP-Rule:MF_00158, ECO:0000256|SAAS:SAAS00247611};; Pantoate--beta-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00158, ECO:0000256|SAAS:SAAS00247610}; Pantoate-activating enzyme {ECO:0000256|HAMAP-Rule:MF_00158}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
panC; pantoate--beta-alanine ligase (EC:6.3.2.1)
Pantothenate synthetase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=PANC_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_105205_9
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7968..8528)
DNA (561bp) protein (187aa)
Sulfotransferase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G3V3_NOVAD
TPR domain protein {ECO:0000313|EMBL:GAO54123.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
sulfotransferase
Displaying 9 items

View Taxonomy