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2019_SCN_bioreactor_t3_biofilm_scaffold_106231

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t3_biofilm_scaffold_106231_1
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..316
DNA (315bp) protein (105aa)
adenylosuccinate synthetase (EC:6.3.4.4)
Adenylosuccinate synthetase {ECO:0000255|HAMAP-Rule:MF_00011}; Short=AMPSase {ECO:0000255|HAMAP-Rule:MF_00011};; Short=AdSS {ECO:0000255|HAMAP-Rule:MF_00011};; EC=6.3.4.4 {ECO:0000255|HAMAP-Rule:MF_00011};; IMP--aspartate ligase {ECO:0000255|HAMAP-Rule:MF_00011}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
Adenylosuccinate synthetase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=PURA_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_106231_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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321..818
DNA (498bp) protein (166aa)
ErfK/YbiS/YcfS/YnhG n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G4V3_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO53734.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
ErfK/YbiS/YcfS/YnhG
2019_SCN_bioreactor_t3_biofilm_scaffold_106231_3
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

923..1948
DNA (1026bp) protein (342aa)
hypothetical protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B76C10
Uncharacterized protein {ECO:0000313|EMBL:GAO53733.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_106231_4
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1983..4013)
DNA (2031bp) protein (677aa)
TonB-dependent receptor n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9WBS4_9SPHN
TonB-dependent receptor {ECO:0000313|EMBL:GAO53732.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
TonB-dependent receptor
2019_SCN_bioreactor_t3_biofilm_scaffold_106231_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4077..4619
DNA (543bp) protein (181aa)
Uncharacterized protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WXU5_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:GAO53731.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_106231_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4640..5614
DNA (975bp) protein (325aa)
di-heme cytochrome c peroxidase (EC:1.11.1.5)
Di-heme cytochrome c peroxidase n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WXU6_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:GAO53730.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
2019_SCN_bioreactor_t3_biofilm_scaffold_106231_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5736..6107)
DNA (372bp) protein (124aa)
Putative ModE family transcriptional regulator n=1 Tax=Sphingobium sp. SYK-6 RepID=G2INF1_9SPHN
DNA-binding domain of modE {ECO:0000313|EMBL:GAO53729.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
putative ModE family transcriptional regulator
2019_SCN_bioreactor_t3_biofilm_scaffold_106231_8
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6150..6782)
DNA (633bp) protein (211aa)
Thioredoxin family protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G4V9_NOVAD
Thiol:disulfide oxidoreductase tlpA {ECO:0000313|EMBL:GAO53728.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
thioredoxin family protein
2019_SCN_bioreactor_t3_biofilm_scaffold_106231_9
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6799..8175
DNA (1377bp) protein (459aa)
Argininosuccinate lyase {ECO:0000256|HAMAP-Rule:MF_00006, ECO:0000256|SAAS:SAAS00211019}; Short=ASAL {ECO:0000256|HAMAP-Rule:MF_00006};; EC=4.3.2.1 {ECO:0000256|HAMAP-Rule:MF_00006, ECO:0000256|SAAS:SAAS00211017};; Arginosuccinase {ECO:0000256|HAMAP-Rule:MF_00006}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
argininosuccinate lyase (EC:4.3.2.1)
Argininosuccinate lyase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=ARLY_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_106231_10
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8180..8467
DNA (288bp) protein (96aa)
argininosuccinate lyase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B47609
Uncharacterized protein {ECO:0000313|EMBL:GAO53726.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_106231_11
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8489..9751
DNA (1263bp) protein (421aa)
Diaminopimelate decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120, ECO:0000256|RuleBase:RU003738}; Short=DAP decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120};; Short=DAPDC {ECO:0000256|HAMAP-Rule:MF_02120};; EC=4.1.1.20 {ECO:0000256|HAMAP-Rule:MF_02120, ECO:0000256|RuleBase:RU003738};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
diaminopimelate decarboxylase (EC:4.1.1.20)
Diaminopimelate decarboxylase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G4W2_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_106231_12
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9867..10628
DNA (762bp) protein (254aa)
Siroheme synthase n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z6T7_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO53724.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
siroheme synthase
2019_SCN_bioreactor_t3_biofilm_scaffold_106231_13
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10632..11081)
DNA (450bp) protein (150aa)
Phenylacetic acid degradation-related protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z6T8_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO53723.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
phenylacetic acid degradation-like protein
2019_SCN_bioreactor_t3_biofilm_scaffold_106231_14
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11066..11554)
DNA (489bp) protein (163aa)
Phenylacetic acid degradation-related protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9X3_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO53722.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
phenylacetic acid degradation-like protein
2019_SCN_bioreactor_t3_biofilm_scaffold_106231_15
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11626..12093)
DNA (468bp) protein (156aa)
Putative Holliday junction resolvase {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086483}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086510};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Putative Holliday junction resolvase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=RUVX_NOVAD
Holliday junction resolvase-like protein
2019_SCN_bioreactor_t3_biofilm_scaffold_106231_16
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12090..13217)
DNA (1128bp) protein (376aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9X1_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO53720.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_106231_17
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13231..13410)
DNA (180bp) protein (60aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z6U2_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO53719.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
Displaying 17 items

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