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2019_SCN_bioreactor_t3_biofilm_scaffold_164914

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2019_SCN_bioreactor_t3_biofilm_scaffold_164914_1
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..1113
DNA (1113bp) protein (371aa)
Catalase {ECO:0000256|RuleBase:RU000498}; EC=1.11.1.6 {ECO:0000256|RuleBase:RU000498};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
katE; catalase (EC:1.11.1.6)
catalase n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CACCD
2019_SCN_bioreactor_t3_biofilm_scaffold_164914_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1110..2849
DNA (1740bp) protein (580aa)
Uncharacterized protein n=1 Tax=Sphingobium sp. AP49 RepID=J2DHN3_9SPHN
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:GAO56605.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
FAD dependent oxidoreductase
2019_SCN_bioreactor_t3_biofilm_scaffold_164914_3
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2853..3554)
DNA (702bp) protein (234aa)
Peptidase M50 n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0J603_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO56574.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
peptidase M48
2019_SCN_bioreactor_t3_biofilm_scaffold_164914_4
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3551..4129)
DNA (579bp) protein (193aa)
Thymidine kinase {ECO:0000256|HAMAP-Rule:MF_00124, ECO:0000256|RuleBase:RU000544}; EC=2.7.1.21 {ECO:0000256|HAMAP-Rule:MF_00124, ECO:0000256|RuleBase:RU000544};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
thymidine kinase (EC:2.7.1.21)
Thymidine kinase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=KITH_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_164914_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4142..4558)
DNA (417bp) protein (139aa)
Ribosome-binding factor A n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZAL4_9SPHN
Ribosome-binding factor A {ECO:0000313|EMBL:GAO56572.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
rbfA; ribosome-binding factor A
2019_SCN_bioreactor_t3_biofilm_scaffold_164914_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4878..5252
DNA (375bp) protein (125aa)
membrane protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B727F7
Transmembrane protein {ECO:0000313|EMBL:GAO56571.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_164914_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5293..5988)
DNA (696bp) protein (232aa)
NADH dehydrogenase {ECO:0000313|EMBL:GAO56569.1}; EC=1.6.99.3 {ECO:0000313|EMBL:GAO56569.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Putative nitroreductase n=1 Tax=Gordonia terrae NBRC 100016 RepID=H5UGX7_9ACTO
nitroreductase
2019_SCN_bioreactor_t3_biofilm_scaffold_164914_8
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6053..7273)
DNA (1221bp) protein (407aa)
5-aminolevulinate synthase {ECO:0000256|RuleBase:RU910713}; EC=2.3.1.37 {ECO:0000256|RuleBase:RU910713};; 5-aminolevulinic acid synthase {ECO:0000256|RuleBase:RU910713}; Delta-ALA synthase {ECO:0000256|RuleBase:RU910713}; Delta-aminolevulinate synthase {ECO:0000256|RuleBase:RU910713}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
5-aminolevulinate synthase (EC:2.3.1.37)
5-aminolevulinate synthase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G7D6_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_164914_9
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7270..8292)
DNA (1023bp) protein (341aa)
Beta-lactamase-like protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G7D5_NOVAD
Zn-dependent hydrolases, including glyoxylases {ECO:0000313|EMBL:GAO56567.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
beta-lactamase-like protein
2019_SCN_bioreactor_t3_biofilm_scaffold_164914_10
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8321..9169)
DNA (849bp) protein (283aa)
Glutamate racemase {ECO:0000256|HAMAP-Rule:MF_00258}; EC=5.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00258};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
glutamate racemase (EC:5.1.1.3)
Glutamate racemase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G7D4_NOVAD
2019_SCN_bioreactor_t3_biofilm_scaffold_164914_11
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9256..9870
DNA (615bp) protein (205aa)
Glycerol-3-phosphate acyltransferase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=PLSY_NOVAD
Glycerol-3-phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; Acyl-PO4 G3P acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; Acyl-phosphate--glycerol-3-phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; G3P acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; Lysophosphatidic acid synthase {ECO:0000256|HAMAP-Rule:MF_01043}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
acyl-phosphate glycerol-3-phosphate acyltransferase
2019_SCN_bioreactor_t3_biofilm_scaffold_164914_12
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9867..11012
DNA (1146bp) protein (382aa)
DNA protecting protein DprA n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G7D2_NOVAD
Rossmann fold nucleotide-binding protein Smf {ECO:0000313|EMBL:GAO56564.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
DNA processing protein DprA
2019_SCN_bioreactor_t3_biofilm_scaffold_164914_13
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11032..11379
DNA (348bp) protein (116aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G7D1_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO56563.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
2019_SCN_bioreactor_t3_biofilm_scaffold_164914_14
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11493..12497
DNA (1005bp) protein (335aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UTB6_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO56562.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
2019_SCN_bioreactor_t3_biofilm_scaffold_164914_15
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12518..12763
DNA (246bp) protein (82aa)
Uncharacterized protein {ECO:0000313|EMBL:GAO56561.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Displaying 15 items

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